View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_121 (Length: 285)
Name: NF11293A_low_121
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_121 |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 6899031 - 6898908
Alignment:
| Q |
1 |
aacaagattggtttcttctctcttttttgtttcatccaccaattcaattgtaattaaaagccgtcaagagtgtgtataatatacttacaaaagctgattg |
100 |
Q |
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| T |
6899031 |
aacaagattggtttcttctctcttttttgtttcatccaccaattcaattgtaattaaaagccgtcaagagtgtgtataatatacttacaaaagctgattg |
6898932 |
T |
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| Q |
101 |
tgaatcggagacgactttattaat |
124 |
Q |
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| T |
6898931 |
tgaatctgagacgactttattaat |
6898908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 162 - 256
Target Start/End: Complemental strand, 6895475 - 6895381
Alignment:
| Q |
162 |
tcaacaaattgattaaaatgagcttctaattcattgattgtctaaaaggagtatatatacaatgtctaatccataggaatacaaacttacttcct |
256 |
Q |
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| T |
6895475 |
tcaacaaattaattaaaatgagcttctaattcattgattgtctaaaaggaatatatatacaatgtctaatccataggaatacaaacttacttcct |
6895381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 163
Target Start/End: Complemental strand, 6898864 - 6898820
Alignment:
| Q |
119 |
attaatttgagatgtctctctacactaataccataaaaagatatc |
163 |
Q |
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| T |
6898864 |
attaatttaagatgtctctctacactgataccataaaaagatatc |
6898820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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