View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11293A_low_124 (Length: 279)

Name: NF11293A_low_124
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11293A_low_124
NF11293A_low_124
[»] chr1 (10 HSPs)
chr1 (73-191)||(31771310-31771428)
chr1 (73-195)||(7608318-7608440)
chr1 (127-220)||(7608224-7608317)
chr1 (127-220)||(31771212-31771305)
chr1 (215-273)||(7608097-7608155)
chr1 (215-271)||(31771087-31771143)
chr1 (73-130)||(1721556-1721613)
chr1 (63-130)||(17726023-17726089)
chr1 (72-117)||(32440659-32440704)
chr1 (72-130)||(22368196-22368254)
[»] scaffold0152 (1 HSPs)
scaffold0152 (73-169)||(10195-10291)
[»] chr3 (9 HSPs)
chr3 (68-147)||(19766009-19766088)
chr3 (5-60)||(11427105-11427160)
chr3 (62-117)||(11394007-11394062)
chr3 (84-169)||(31687881-31687966)
chr3 (73-117)||(46233973-46234017)
chr3 (218-254)||(31688056-31688092)
chr3 (67-130)||(52130783-52130846)
chr3 (218-254)||(31896775-31896811)
chr3 (218-254)||(31912484-31912520)
[»] chr2 (5 HSPs)
chr2 (59-130)||(997806-997877)
chr2 (72-147)||(4453777-4453852)
chr2 (72-117)||(9208569-9208614)
chr2 (68-107)||(7161811-7161850)
chr2 (63-126)||(3625169-3625234)
[»] chr4 (5 HSPs)
chr4 (63-130)||(32651267-32651334)
chr4 (63-147)||(38467690-38467775)
chr4 (75-147)||(3649873-3649945)
chr4 (65-128)||(41810163-41810226)
chr4 (73-108)||(26720237-26720272)
[»] scaffold0003 (3 HSPs)
scaffold0003 (73-169)||(36966-37062)
scaffold0003 (68-108)||(43199-43239)
scaffold0003 (218-254)||(36840-36876)
[»] chr6 (3 HSPs)
chr6 (62-107)||(31444760-31444805)
chr6 (68-108)||(27444122-27444162)
chr6 (67-115)||(33054175-33054223)
[»] scaffold0014 (1 HSPs)
scaffold0014 (66-108)||(32608-32650)
[»] chr8 (2 HSPs)
chr8 (73-147)||(44663663-44663737)
chr8 (73-147)||(35348991-35349066)
[»] chr7 (2 HSPs)
chr7 (68-117)||(16262692-16262741)
chr7 (73-115)||(21820186-21820228)


Alignment Details
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 73 - 191
Target Start/End: Complemental strand, 31771428 - 31771310
Alignment:
Q  73 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgccaacaaacctcagcccttggatctaatc 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  31771428 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctgttttaggcgccaacaaacctcagcccttggatctaatc 31771329  T
Q  173 tgtttgccattttttcctc 191  Q
    ||||||| |||||||||||    
T  31771328 tgtttgcaattttttcctc 31771310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 73 - 195
Target Start/End: Complemental strand, 7608440 - 7608318
Alignment:
Q  73 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgccaacaaacctcagcccttggatctaatc 172  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||    
T  7608440 atctaacttattcctaatcctagttaaaactccaaataacactcccaaccctaattctcctgttttaggcgccaacaaatctcagcccttggatctaatc 7608341  T
Q  173 tgtttgccattttttcctccttt 195  Q
    ||||||| |||||||||||||||    
T  7608340 tgtttgcaattttttcctccttt 7608318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 127 - 220
Target Start/End: Complemental strand, 7608317 - 7608224
Alignment:
Q  127 ttctcctattttaggtgccaacaaacctcagcccttggatctaatctgtttgccattttttcctcctttcttacgtgacaaaattaattgtatt 220  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7608317 ttctcctgttttaggcgccaacaaacctcagcccttggatctaatctgtttgccattttttcctcctttcttacgtgacaaaattaattgtatt 7608224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 127 - 220
Target Start/End: Complemental strand, 31771305 - 31771212
Alignment:
Q  127 ttctcctattttaggtgccaacaaacctcagcccttggatctaatctgtttgccattttttcctcctttcttacgtgacaaaattaattgtatt 220  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31771305 ttctcctgttttaggcgccaacaaacctcagcccttggatctaatctgtttgccagtttttcctcctttcttacgtgacaaaattaattgtatt 31771212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 215 - 273
Target Start/End: Complemental strand, 7608155 - 7608097
Alignment:
Q  215 tgtattgtaaatgacaaataattaatgttattggtttccagtaaccctcctttctctcc 273  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7608155 tgtattgtaaatgacaaataattaatgttattggtttccaataaccctcctttctctcc 7608097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 31771143 - 31771087
Alignment:
Q  215 tgtattgtaaatgacaaataattaatgttattggtttccagtaaccctcctttctct 271  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  31771143 tgtattgtaaatgacaaataattaatgttattggtttccaataaccctcctttctct 31771087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 1721556 - 1721613
Alignment:
Q  73 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct 130  Q
    |||||||||||||||||||||| |||||||||||| |||| || ||||||||||||||    
T  1721556 atctaacttattcctaatcctaattaacactccaattaacgctgccaaccctaattct 1721613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 17726023 - 17726089
Alignment:
Q  63 atctaatctaatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct 130  Q
    |||||||||||||||| |||||||||||||||||||||||||||| || ||||   ||||||||||||    
T  17726023 atctaatctaatctaa-ttattcctaatcctagttaacactccaattatcacttaaaaccctaattct 17726089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 32440704 - 32440659
Alignment:
Q  72 aatctaacttattcctaatcctagttaacactccaaataacactcc 117  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  32440704 aatctaacttattcctaatcctagttaacactccaattatcactcc 32440659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 22368254 - 22368196
Alignment:
Q  72 aatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct 130  Q
    |||||||||||||||||||||||||||||||| ||| || ||||   ||||||||||||    
T  22368254 aatctaacttattcctaatcctagttaacacttcaattatcacttaaaaccctaattct 22368196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 73 - 169
Target Start/End: Original strand, 10195 - 10291
Alignment:
Q  73 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgcc-aacaaacctcagcccttggatcta 169  Q
    |||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||| || ||||||| ||| ||||| ||| ||||||||||||||    
T  10195 atctaacttattcccaatcctagttaacactccaattaacactccaaaccctaattctacttttttaggcgccaaacaatcct-agcccttggatcta 10291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 68 - 147
Target Start/End: Original strand, 19766009 - 19766088
Alignment:
Q  68 atctaatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgccaa 147  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||| || || ||||||| |||||    
T  19766009 atctaatctaacttatttctaatcctagttaacactccaattaacactccaaaccctaatcctacttttttaggcgccaa 19766088  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 11427160 - 11427105
Alignment:
Q  5 acatcattttcatagtatcaagatgcaaaactaattacattttgcaatcaggtaat 60  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  11427160 acatcattttcatggtatcaagatgcaaaactaattatattttgcaatcaggtaat 11427105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 11394007 - 11394062
Alignment:
Q  62 tatctaatctaatctaacttattcctaatcctagttaacactccaaataacactcc 117  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| || ||||||    
T  11394007 tatctaatctaatctaacttatttctaatcctagttaacactccaattatcactcc 11394062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 169
Target Start/End: Original strand, 31687881 - 31687966
Alignment:
Q  84 tcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgcc-aacaaacctcagcccttggatcta 169  Q
    ||||| |||||||||||||||||| | ||||||| |||||||||||| || ||||||| ||| ||||| ||| ||||||||||||||    
T  31687881 tcctagtcctagttaacactccaacttacactccaaaccctaattctacttttttaggcgccaaacaatcct-agcccttggatcta 31687966  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 46234017 - 46233973
Alignment:
Q  73 atctaacttattcctaatcctagttaacactccaaataacactcc 117  Q
    ||||||||||||||||||||||||||||||||||| || ||||||    
T  46234017 atctaacttattcctaatcctagttaacactccaattatcactcc 46233973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 254
Target Start/End: Original strand, 31688056 - 31688092
Alignment:
Q  218 attgtaaatgacaaataattaatgttattggtttcca 254  Q
    |||||||||||||||||||||||||||| ||||||||    
T  31688056 attgtaaatgacaaataattaatgttatcggtttcca 31688092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 52130783 - 52130846
Alignment:
Q  67 aatctaatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct 130  Q
    |||||| ||||||||||| |||||||||| ||||||||||| || ||||   ||||||||||||    
T  52130783 aatctagtctaacttatttctaatcctaggtaacactccaattaccacttaaaaccctaattct 52130846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 254
Target Start/End: Complemental strand, 31896811 - 31896775
Alignment:
Q  218 attgtaaatgacaaataattaatgttattggtttcca 254  Q
    |||||||||||||||||||||||||||| | ||||||    
T  31896811 attgtaaatgacaaataattaatgttatcgatttcca 31896775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 254
Target Start/End: Complemental strand, 31912520 - 31912484
Alignment:
Q  218 attgtaaatgacaaataattaatgttattggtttcca 254  Q
    |||||||||||||||||||||||||||| | ||||||    
T  31912520 attgtaaatgacaaataattaatgttatcgatttcca 31912484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 59 - 130
Target Start/End: Original strand, 997806 - 997877
Alignment:
Q  59 atctatctaatctaatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| || | || ||||||||||||||    
T  997806 atctatctaatctaatctaacttattcctaatcctagttaacacttcaattagccctgccaaccctaattct 997877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 4453777 - 4453852
Alignment:
Q  72 aatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgccaa 147  Q
    |||||||||||||||||||||||||||||||||||| || ||||   ||||||||||||   |||||||| |||||    
T  4453777 aatctaacttattcctaatcctagttaacactccaattaccacttaaaaccctaattctatgattttaggcgccaa 4453852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 9208569 - 9208614
Alignment:
Q  72 aatctaacttattcctaatcctagttaacactccaaataacactcc 117  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  9208569 aatctaacttattcctaatcctagttaacactccaattatcactcc 9208614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 107
Target Start/End: Original strand, 7161811 - 7161850
Alignment:
Q  68 atctaatctaacttattcctaatcctagttaacactccaa 107  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  7161811 atctaatctaacttatttctaatcctagttaacactccaa 7161850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 126
Target Start/End: Original strand, 3625169 - 3625234
Alignment:
Q  63 atctaatctaa--tctaacttattcctaatcctagttaacactccaaataacactcccaaccctaa 126  Q
    |||||||||||  ||||||||||||||||||||| |||||||||||| ||||  | ||||||||||    
T  3625169 atctaatctaacttctaacttattcctaatcctaattaacactccaattaaccatgccaaccctaa 3625234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 130
Target Start/End: Complemental strand, 32651334 - 32651267
Alignment:
Q  63 atctaatctaatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||||   ||||||||||||    
T  32651334 atctaatctaatctaacttattcctaatcctagttaacactccaattatcacttaaaaccctaattct 32651267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 38467775 - 38467690
Alignment:
Q  63 atctaatctaatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct-cctattttaggtgccaa 147  Q
    ||||||||||||||||||||||  ||||||||||||||||||||| |||||||   |||||||||||| | ||||||||| |||||    
T  38467775 atctaatctaatctaacttatttataatcctagttaacactccaattaacacttaaaaccctaattctacttattttaggcgccaa 38467690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 75 - 147
Target Start/End: Original strand, 3649873 - 3649945
Alignment:
Q  75 ctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgccaa 147  Q
    ||||||||||||||||||||||||||||||||| |||||||   |||||||| ||| || ||||||| |||||    
T  3649873 ctaacttattcctaatcctagttaacactccaattaacacttaaaaccctaaatctacttttttaggcgccaa 3649945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 128
Target Start/End: Original strand, 41810163 - 41810226
Alignment:
Q  65 ctaatctaatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaatt 128  Q
    |||||||||||||||||||| |||||||||||||||||||||| || ||||   ||||||||||    
T  41810163 ctaatctaatctaacttatttctaatcctagttaacactccaattaccacttaaaaccctaatt 41810226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 108
Target Start/End: Original strand, 26720237 - 26720272
Alignment:
Q  73 atctaacttattcctaatcctagttaacactccaaa 108  Q
    ||||||||||||||||||||||||||||||||||||    
T  26720237 atctaacttattcctaatcctagttaacactccaaa 26720272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 73 - 169
Target Start/End: Complemental strand, 37062 - 36966
Alignment:
Q  73 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgcc-aacaaacctcagcccttggatcta 169  Q
    |||||||||||||||||||||| |||||||||||| ||||||| | || ||||||||| || ||||||| ||| ||||| ||| ||||||||||||||    
T  37062 atctaacttattcctaatcctaattaacactccaattaacacttcaaatcctaattcttcttttttaggcgccaaacaatcct-agcccttggatcta 36966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 43239 - 43199
Alignment:
Q  68 atctaatctaacttattcctaatcctagttaacactccaaa 108  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  43239 atctaatctaacttattcctaatcgtagttaacactccaaa 43199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 254
Target Start/End: Complemental strand, 36876 - 36840
Alignment:
Q  218 attgtaaatgacaaataattaatgttattggtttcca 254  Q
    |||||||||||||||||||||||||||| ||||||||    
T  36876 attgtaaatgacaaataattaatgttatcggtttcca 36840  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 107
Target Start/End: Original strand, 31444760 - 31444805
Alignment:
Q  62 tatctaatctaatctaacttattcctaatcctagttaacactccaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  31444760 tatctaatctaatctaacttattcctaatcctagttaacactccaa 31444805  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 27444122 - 27444162
Alignment:
Q  68 atctaatctaacttattcctaatcctagttaacactccaaa 108  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  27444122 atctaatctaacttattcctaatcgtagttaacactccaaa 27444162  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 33054223 - 33054175
Alignment:
Q  67 aatctaatctaacttattcctaatcctagttaacactccaaataacact 115  Q
    |||||||||||||||||||||||||||| |||||||| ||| |||||||    
T  33054223 aatctaatctaacttattcctaatcctaattaacactacaattaacact 33054175  T

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Target: scaffold0014 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 32608 - 32650
Alignment:
Q  66 taatctaatctaacttattcctaatcctagttaacactccaaa 108  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  32608 taatctaatctaacttatttctaatcctagttaacactccaaa 32650  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 147
Target Start/End: Complemental strand, 44663737 - 44663663
Alignment:
Q  73 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgccaa 147  Q
    ||||||||||||||||||||||||||||||||||| || ||||   ||||||||||||   |||||||| |||||    
T  44663737 atctaacttattcctaatcctagttaacactccaattaccacttaaaaccctaattctatgattttaggcgccaa 44663663  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 147
Target Start/End: Original strand, 35348991 - 35349066
Alignment:
Q  73 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct-cctattttaggtgccaa 147  Q
    |||||||||||| |||||||||||||||||||||| |||||||   || ||||||||| | ||||||||| |||||    
T  35348991 atctaacttatttctaatcctagttaacactccaattaacacttaaaatcctaattctacttattttaggcgccaa 35349066  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 117
Target Start/End: Complemental strand, 16262741 - 16262692
Alignment:
Q  68 atctaatctaacttattcctaatcctagttaacactccaaataacactcc 117  Q
    |||||||||||||||||||||||||||||||||||| ||| || ||||||    
T  16262741 atctaatctaacttattcctaatcctagttaacacttcaattatcactcc 16262692  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 115
Target Start/End: Complemental strand, 21820228 - 21820186
Alignment:
Q  73 atctaacttattcctaatcctagttaacactccaaataacact 115  Q
    |||||||||||||||||||||| |||||||||||| |||||||    
T  21820228 atctaacttattcctaatcctaattaacactccaattaacact 21820186  T

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