View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_128 (Length: 276)
Name: NF11293A_low_128
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_128 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 3875883 - 3876060
Alignment:
| Q |
1 |
aatatccaaaacaacttataattttggacggaggaagtacctcacaaatcaagtaaatgaccaataaattgagctaaatgaagccgataactcttattta |
100 |
Q |
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| T |
3875883 |
aatatccaaaacaactaataattttggacggaggaagtacctcacaaatcaagtaaatgaccaataaattgagctaaatgaagccgataactcttatttc |
3875982 |
T |
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| Q |
101 |
tgagagttatgagtggttaatgatctcccaattactaaatgaatgatatacaagagatgtgactcatttacttaatacgt |
180 |
Q |
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| T |
3875983 |
t--gagttatgagtggttaatgatctcccaattactaaatgaatgatatacaagagatgtgactcatatacttaatacgt |
3876060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 217 - 270
Target Start/End: Original strand, 3876090 - 3876144
Alignment:
| Q |
217 |
tatgtgttgttaaa-tctcgtgggaaacaagttgcttaataatagtggtgtccaa |
270 |
Q |
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| T |
3876090 |
tatgtgttgttaaaatctcgtgggaaacaagttgcttaataatagtggtgtccaa |
3876144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 11135013 - 11135051
Alignment:
| Q |
1 |
aatatccaaaacaacttataattttggacggaggaagta |
39 |
Q |
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| T |
11135013 |
aataaccaaaacaacttataatttaggacggaggaagta |
11135051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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