View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11293A_low_13 (Length: 453)

Name: NF11293A_low_13
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11293A_low_13
NF11293A_low_13
[»] chr3 (2 HSPs)
chr3 (7-448)||(29018093-29018491)
chr3 (7-69)||(55428780-55428841)
[»] chr1 (3 HSPs)
chr1 (102-211)||(10480942-10481051)
chr1 (7-69)||(5171442-5171503)
chr1 (7-69)||(6771182-6771243)
[»] chr7 (3 HSPs)
chr7 (7-72)||(33192845-33192909)
chr7 (7-48)||(5952731-5952771)
chr7 (12-69)||(48948617-48948673)
[»] chr8 (1 HSPs)
chr8 (7-69)||(15917074-15917135)
[»] chr4 (1 HSPs)
chr4 (6-69)||(49398328-49398390)
[»] chr2 (1 HSPs)
chr2 (7-69)||(9388693-9388754)
[»] chr6 (3 HSPs)
chr6 (7-60)||(26292115-26292167)
chr6 (7-48)||(34252492-34252532)
chr6 (7-69)||(32286199-32286260)
[»] chr5 (1 HSPs)
chr5 (17-69)||(11681208-11681259)


Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 7 - 448
Target Start/End: Complemental strand, 29018491 - 29018093
Alignment:
Q  7 ttggagttgctcgcttgagattgtagtttcggttttgtttttgttatttcttctcgataaaaataattgctnnnnnnncggatccaactgttgtcaacta 106  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||                   |||  |||||||    
T  29018491 ttggagttgctcgcttgggattgtagtttctgttttgtttttgttatttcttctcgataaaaataattg-------------------tgtaatcaacta 29018411  T
Q  107 cagttcgactttttcagttgtagttaacaaccgttgaacattttttaaagcggtctaattactttttaagtcggttttagtcaactttaaaattgattga 206  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||                ||||||||||||||||||||||    
T  29018410 cagttcgattttttcagttgtaattaacaaccgttgaacattttttaaagcggactaattac----------------agtcaactttaaaattgattga 29018327  T
Q  207 accacttatagttaactatagttgaatacgnnnnnnnagcaatttcttccgtgaggagtaactttaagaaaattatggtacactaagtgaaccatccatg 306  Q
    ||||||||||    ||||||||| ||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29018326 accacttata----actatagttaaatacgtttttttagcaatttcttccgtgaggagtaactttaagaaaattatggtacactaagtgaaccatccatg 29018231  T
Q  307 atagtgatccacgatagaagacacttgttagtccatcccattcttcttaaagtatattcaatgaacatctttattcttaacttttctatatggtcataga 406  Q
    ||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29018230 atagtgat----gatagaagacacttgttagtccatcccattcttcttaaagtatattcaatgaacatctttattcctaacttttctatatggtcataga 29018135  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 55428841 - 55428780
Alignment:
Q  7 ttggagttgctcgcttgagattgtagtttcggttttgtttttgttatttcttctcgataaaaa 69  Q
    ||||||||| | |||| |||||||||||| |||||||||||| | ||||||||| ||||||||    
T  55428841 ttggagttgtttgcttaagattgtagttt-ggttttgtttttatcatttcttcttgataaaaa 55428780  T

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Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 102 - 211
Target Start/End: Original strand, 10480942 - 10481051
Alignment:
Q  102 aactacagttcgactttttcagttgtagttaacaaccgttgaacattttttaaagcggtctaattactttttaagtcggttttagtcaactttaaaattg 201  Q
    |||||||||||| |||||||| ||||||||||| || |||| |||||| ||||||| ||||||| |||||||||||||||||||| || ||| |||| |     
T  10480942 aactacagttcgtctttttcaattgtagttaactactgttggacatttcttaaagcagtctaataactttttaagtcggttttagccagcttaaaaagta 10481041  T
Q  202 attgaaccac 211  Q
    ||||||||||    
T  10481042 attgaaccac 10481051  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 5171442 - 5171503
Alignment:
Q  7 ttggagttgctcgcttgagattgtagtttcggttttgtttttgttatttcttctcgataaaaa 69  Q
    ||||||||||||||||||||||||||||| | |||||||||| | ||||||||| ||||||||    
T  5171442 ttggagttgctcgcttgagattgtagttt-gattttgtttttatcatttcttcttgataaaaa 5171503  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 6771182 - 6771243
Alignment:
Q  7 ttggagttgctcgcttgagattgtagtttcggttttgtttttgttatttcttctcgataaaaa 69  Q
    ||||||||| ||||||||||||||||||| |||||||||||| | |||| |||| ||||||||    
T  6771182 ttggagttgttcgcttgagattgtagttt-ggttttgtttttatcatttattcttgataaaaa 6771243  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 33192845 - 33192909
Alignment:
Q  7 ttggagttgctcgcttgagattgtagtttcggttttgtttttgttatttcttctcgataaaaataa 72  Q
    ||||||||||||||||||||||||||||| |||||| ||||| | ||||||||| |||||||||||    
T  33192845 ttggagttgctcgcttgagattgtagttt-ggttttctttttatcatttcttcttgataaaaataa 33192909  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 5952771 - 5952731
Alignment:
Q  7 ttggagttgctcgcttgagattgtagtttcggttttgttttt 48  Q
    |||||||| |||||||||||||||||||| ||||||||||||    
T  5952771 ttggagttactcgcttgagattgtagttt-ggttttgttttt 5952731  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 48948617 - 48948673
Alignment:
Q  12 gttgctcgcttgagattgtagtttcggttttgtttttgttatttcttctcgataaaaa 69  Q
    |||| |||||| |||||||||||| |||||||||||| | ||||||||| ||||||||    
T  48948617 gttgttcgcttaagattgtagttt-ggttttgtttttatcatttcttcttgataaaaa 48948673  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 15917135 - 15917074
Alignment:
Q  7 ttggagttgctcgcttgagattgtagtttcggttttgtttttgttatttcttctcgataaaaa 69  Q
    ||||||||||||| ||||||||||||||| |||||||||||| | ||||||||| ||||||||    
T  15917135 ttggagttgctcgtttgagattgtagttt-ggttttgtttttatcatttcttcttgataaaaa 15917074  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 49398390 - 49398328
Alignment:
Q  6 tttggagttgctcgcttgagattgtagtttcggttttgtttttgttatttcttctcgataaaaa 69  Q
    |||||||||| | |||||| |||||||||| ||||||| |||||||||||||||| ||||||||    
T  49398390 tttggagttgttagcttgaaattgtagttttggttttg-ttttgttatttcttcttgataaaaa 49398328  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 9388754 - 9388693
Alignment:
Q  7 ttggagttgctcgcttgagattgtagtttcggttttgtttttgttatttcttctcgataaaaa 69  Q
    ||||||||||||||||||||||||||||| | |||||||||| | ||||| ||| ||||||||    
T  9388754 ttggagttgctcgcttgagattgtagttt-gattttgtttttatcatttcatcttgataaaaa 9388693  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 26292167 - 26292115
Alignment:
Q  7 ttggagttgctcgcttgagattgtagtttcggttttgtttttgttatttcttct 60  Q
    |||||||||||||||||| |||||||||| |||||||||||| | |||||||||    
T  26292167 ttggagttgctcgcttgaaattgtagttt-ggttttgtttttatcatttcttct 26292115  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 34252492 - 34252532
Alignment:
Q  7 ttggagttgctcgcttgagattgtagtttcggttttgttttt 48  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  34252492 ttggagttgctcgcttgagattgtagttt-ggttttgttttt 34252532  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 32286199 - 32286260
Alignment:
Q  7 ttggagttgctcgcttgagattgtagtttcggttttgtttttgttatttcttctcgataaaaa 69  Q
    ||||||||||| |||||| |||||||||| |||||||||||| | ||||||||  ||||||||    
T  32286199 ttggagttgctagcttgaaattgtagttt-ggttttgtttttatcatttcttcatgataaaaa 32286260  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 11681208 - 11681259
Alignment:
Q  17 tcgcttgagattgtagtttcggttttgtttttgttatttcttctcgataaaaa 69  Q
    ||||||||||||||||||| ||||||| |||||| |||||||||  |||||||    
T  11681208 tcgcttgagattgtagttttggttttg-ttttgtcatttcttcttaataaaaa 11681259  T

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