View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_132 (Length: 273)
Name: NF11293A_low_132
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_132 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 9370518 - 9370248
Alignment:
| Q |
1 |
gcgctcttcctccattccaaatcaccatcgtcaaatttcacctatcaaattcccactcgtacatgattccgaagactaccattcctcagaaaaagaaatc |
100 |
Q |
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||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||| ||||||||| | |||||||||||||||||||||||||| |
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| T |
9370518 |
gcgctcttcctccattccaaatcaccatcttcaaacttcacccatcaaattcccactcgtatatgattccggaaactaccattcctcagaaaaagaaatc |
9370419 |
T |
|
| Q |
101 |
attgattccctcaacaataccaactcaacattctattacctctccaaacgcactctcgtccttgtcaagccaccacaacatggaaaaaccctaattcgtc |
200 |
Q |
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||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9370418 |
attgattccctcaacaataccaactcaccattatgttacctctccaaacgcactctcgtccttgtcaagccaccacaacatggaaaaaccctaattcgtc |
9370319 |
T |
|
| Q |
201 |
gtcgtccttggttgattagagttacacaaaactcacatggaaaaactaaattcttcgacccattcatctca |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
9370318 |
gtcgtccttggttgattagagttacacaaaactcacatggaaaaactaaattcttcaacccagtcatctca |
9370248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 9348864 - 9348594
Alignment:
| Q |
1 |
gcgctcttcctccattccaaatcaccatcgtcaaatttcacctatcaaattcccactcgtacatgattccgaagactaccattcctcagaaaaagaaatc |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||| | |||||||| |||||||||||||||| |
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| T |
9348864 |
gcgctcttcctccattccaaatcaccatcgtcaaacttcacccatcctattcccactcgtacatgattccagaaactaccatctctcagaaaaagaaatc |
9348765 |
T |
|
| Q |
101 |
attgattccctcaacaataccaactcaacattctattacctctccaaacgcactctcgtccttgtcaagccaccacaacatggaaaaaccctaattcgtc |
200 |
Q |
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| T |
9348764 |
attgattccctcaacaataccaactcaacattctattacctctccaaacgcactctcgtccttgtcaggccaccacaacatggaaaaaccccaattcatc |
9348665 |
T |
|
| Q |
201 |
gtcgtccttggttgattagagttacacaaaactcacatggaaaaactaaattcttcgacccattcatctca |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9348664 |
gtcgtccttggttgattagagttacacaaaactcacatggaaaaactaaattcttcgacccattcatctca |
9348594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 186 - 268
Target Start/End: Complemental strand, 9341396 - 9341314
Alignment:
| Q |
186 |
aaaccctaattcgtcgtcgtccttggttgattagagttacacaaaactcacatggaaaaactaaattcttcgacccattcatc |
268 |
Q |
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|||||||||||| |||||||||||||||||||||| |||| |||||||||||||| ||||| ||| |||| ||||| ||||| |
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| T |
9341396 |
aaaccctaattcctcgtcgtccttggttgattagatttactcaaaactcacatggcaaaaccaaactctttcacccactcatc |
9341314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 9408006 - 9407962
Alignment:
| Q |
202 |
tcgtccttggttgattagagttacacaaaactcacatggaaaaac |
246 |
Q |
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| T |
9408006 |
tcgtccttggttgattagagttacccaaaactcacatggcaaaac |
9407962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 202 - 245
Target Start/End: Complemental strand, 9426213 - 9426170
Alignment:
| Q |
202 |
tcgtccttggttgattagagttacacaaaactcacatggaaaaa |
245 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
9426213 |
tcgtccttggttgattagagttacccaaaactcacatggcaaaa |
9426170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 202 - 245
Target Start/End: Original strand, 9441257 - 9441300
Alignment:
| Q |
202 |
tcgtccttggttgattagagttacacaaaactcacatggaaaaa |
245 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
9441257 |
tcgtccttggttgattagagttacccaaaactcacatggcaaaa |
9441300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 245
Target Start/End: Complemental strand, 9417210 - 9417167
Alignment:
| Q |
202 |
tcgtccttggttgattagagttacacaaaactcacatggaaaaa |
245 |
Q |
| |
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||||||||||||||| |||||||| |||||||||||||| |||| |
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| T |
9417210 |
tcgtccttggttgatcagagttacccaaaactcacatggcaaaa |
9417167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 9353587 - 9353538
Alignment:
| Q |
186 |
aaaccctaattcgtcgtcgtccttggttgattagagttacacaaaactca |
235 |
Q |
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||||||||||||||||||| ||||||||||| || |||| ||||||||| |
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| T |
9353587 |
aaaccctaattcgtcgtcggccttggttgatacgaattacccaaaactca |
9353538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 250825 - 250861
Alignment:
| Q |
199 |
tcgtcgtccttggttgattagagttacacaaaactca |
235 |
Q |
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|||||||||||||||| ||||| |||||||||||||| |
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| T |
250825 |
tcgtcgtccttggttgtttagaattacacaaaactca |
250861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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