View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_137 (Length: 270)
Name: NF11293A_low_137
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_137 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 47 - 259
Target Start/End: Complemental strand, 39290777 - 39290565
Alignment:
| Q |
47 |
aatttaaaacatactaatcgctcagtaaaggacaaaatatcaggcggcattaggatcatcatagtcttgacacatagaaggctcattcttggaacgtttc |
146 |
Q |
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| T |
39290777 |
aatttaaaacatactaatcgctcagtaaaggaaaaaataccaggcggcattaggatcatcatagtcttgacatatagaaggctcattcttggaacgtttc |
39290678 |
T |
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| Q |
147 |
tcataacactcattagaagttggcttcttgtatacagctataccaactttattaagtttatccctgctgatagacaccacttcccaacacattgcttttg |
246 |
Q |
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| T |
39290677 |
tcataacactcattagaagttggcttcttgtatacagctataccaactttattaagtttatccctgctgatagacaccacttcccaacacattgcttttg |
39290578 |
T |
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| Q |
247 |
ttagagccttcat |
259 |
Q |
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||||||||||||| |
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| T |
39290577 |
ttagagccttcat |
39290565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 128 - 265
Target Start/End: Complemental strand, 22861273 - 22861132
Alignment:
| Q |
128 |
ctcattcttggaacgtttctcataacactcattagaagttggcttcttgtatacagctataccaactttattaagtttatccctgctg----atagacac |
223 |
Q |
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| T |
22861273 |
ctcattctttgaaagtttctcataacactccttagaagttggcttcttgtatacaactataccaactccattaagtttatccctgctgataaatagacac |
22861174 |
T |
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| Q |
224 |
cacttcccaacacattgcttttgttagagccttcatatcagt |
265 |
Q |
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| T |
22861173 |
cacttctcaacacattacttttgttagagccttcatttcagt |
22861132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 259
Target Start/End: Complemental strand, 44102911 - 44102745
Alignment:
| Q |
93 |
gcattaggatcatcatagtcttgacacatagaaggctcattcttggaacgtttctcataacactcattagaagttggcttcttgtatacagctataccaa |
192 |
Q |
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||||| ||||||||| | | |||||||| | |||||||||||| || |||| ||||||||| ||||| || |||||||||||||| |||| ||||| |
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| T |
44102911 |
gcattgggatcatcagatttttgacacagtggaggctcattctttgatcgttgctcataacaatcattggatagtggcttcttgtatatggctacaccaa |
44102812 |
T |
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| Q |
193 |
ctttattaagtttatccctgctgatagacaccacttcccaacacattgcttttgttagagccttcat |
259 |
Q |
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| T |
44102811 |
ctccattaacttgatccttgctgattgaaacaagttcccagcatattgattttgttagtgctttcat |
44102745 |
T |
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