View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11293A_low_138 (Length: 270)

Name: NF11293A_low_138
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11293A_low_138
NF11293A_low_138
[»] chr3 (5 HSPs)
chr3 (18-270)||(11897148-11897400)
chr3 (17-270)||(26432593-26432846)
chr3 (17-174)||(23424497-23424654)
chr3 (17-132)||(53608336-53608451)
chr3 (17-45)||(38647305-38647333)
[»] chr8 (4 HSPs)
chr8 (18-270)||(23132480-23132732)
chr8 (71-159)||(26587277-26587365)
chr8 (17-108)||(38348466-38348557)
chr8 (112-270)||(14760016-14760174)
[»] chr2 (9 HSPs)
chr2 (18-270)||(14653575-14653827)
chr2 (22-171)||(26791322-26791471)
chr2 (17-156)||(40328174-40328313)
chr2 (17-156)||(35135231-35135370)
chr2 (74-183)||(16322502-16322611)
chr2 (74-171)||(573245-573342)
chr2 (17-156)||(3779060-3779199)
chr2 (74-156)||(19265469-19265551)
chr2 (26-171)||(177504-177649)
[»] chr1 (4 HSPs)
chr1 (18-270)||(20284849-20285101)
chr1 (16-154)||(50236579-50236717)
chr1 (16-159)||(50451893-50452036)
chr1 (74-132)||(23465403-23465461)
[»] chr4 (6 HSPs)
chr4 (17-168)||(54477407-54477558)
chr4 (64-174)||(14307826-14307936)
chr4 (64-132)||(14291777-14291845)
chr4 (17-108)||(33803974-33804065)
chr4 (74-171)||(3881771-3881868)
chr4 (22-174)||(46784469-46784621)
[»] scaffold0036 (1 HSPs)
scaffold0036 (81-171)||(75967-76057)
[»] chr5 (2 HSPs)
chr5 (65-171)||(32874457-32874563)
chr5 (17-171)||(7817131-7817285)
[»] chr6 (4 HSPs)
chr6 (17-174)||(24893833-24893990)
chr6 (90-174)||(24990660-24990744)
chr6 (74-180)||(13599639-13599745)
chr6 (74-131)||(35233542-35233599)
[»] chr7 (1 HSPs)
chr7 (74-154)||(16769979-16770059)


Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 11897148 - 11897400
Alignment:
Q  18 acatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcct 117  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  11897148 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 11897247  T
Q  118 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcacggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcaccc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||| |||||||||||||||||||    
T  11897248 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctactatcaactcagcagtcgtccaaggaagatgggcaccc 11897347  T
Q  218 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatga 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11897348 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatga 11897400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 17 - 270
Target Start/End: Complemental strand, 26432846 - 26432593
Alignment:
Q  17 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcc 116  Q
    |||||||||||||| |||||||||||||| ||  ||||  | |  ||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| |    
T  26432846 gacatcaccatcaaactcatcatgcattgtgtctcttcatcaaactactctatactttggaatgggaacaagttgccgtctttcaaaccttctcatggtc 26432747  T
Q  117 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcacggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcacc 216  Q
    |||||||||||||||| |||||||||||||| |||||| |||||| ||||||||| || |||||||| ||||| || ||| ||||||||||||||| |||    
T  26432746 tccgacaaggtgatccattgtccccttatctcttcatcatttgcatggaaaagctatccgctgctatcaactccgccgtcacccaaggaagatgggaacc 26432647  T
Q  217 catccaaatcacccctacggggccgcatttatcccatctcctatttgcagatga 270  Q
     || |||||||| ||||||||||||||||||||||| ||||| |||||| ||||    
T  26432646 gattcaaatcactcctacggggccgcatttatcccacctcctttttgcaaatga 26432593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 174
Target Start/End: Original strand, 23424497 - 23424654
Alignment:
Q  17 gacatcaccatcaagctcatcatgcattgcgt-agcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggc 115  Q
    ||||||||||||||||||||||| ||||| || | || ||||   || ||| ||| | ||||| || |||||  |||| |||||||||||  | |||||     
T  23424497 gacatcaccatcaagctcatcatacattgtgtcacctcctccacatt-ctcaatattatggaaaggtaacaaaatgccccctttcaagcccacacatggt 23424595  T
Q  116 ctccgacaaggtgatccgttgtccccttatcttttcatcctttgcacggaaaagctttc 174  Q
    ||| |||||||||| ||| | || |||||||||||||| || |||| ||||||||||||    
T  23424596 ctcagacaaggtgacccgctctctccttatcttttcatactatgcatggaaaagctttc 23424654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 53608451 - 53608336
Alignment:
Q  17 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcc 116  Q
    ||||||||||||||||||||||||||||| ||  | ||  | |  | |||||| ||||||||||| |||||  ||||  |||||| |||||| ||||| |    
T  53608451 gacatcaccatcaagctcatcatgcattgtgtttcctcctctaccttctctattctttggaatggaaacaaaatgccttctttcaggccttcacatggtc 53608352  T
Q  117 tccgacaaggtgatcc 132  Q
    || |||| ||||||||    
T  53608351 tcagacagggtgatcc 53608336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 38647333 - 38647305
Alignment:
Q  17 gacatcaccatcaagctcatcatgcattg 45  Q
    |||||||||||||||||||||||||||||    
T  38647333 gacatcaccatcaagctcatcatgcattg 38647305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 23132732 - 23132480
Alignment:
Q  18 acatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcct 117  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  23132732 acatcaccatcaagttcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 23132633  T
Q  118 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcacggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcaccc 217  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23132632 ccgacaaggtgatacgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgggcaccc 23132533  T
Q  218 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatga 270  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23132532 atccaaatcacccctacggggccccatttatcccatctcctatttgcagatga 23132480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 159
Target Start/End: Original strand, 26587277 - 26587365
Alignment:
Q  71 ctttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttg 159  Q
    ||||| ||||| ||||| ||||| || ||||||||| | |||||||||||||||||||| || ||||| || || || ||||| |||||    
T  26587277 ctttgaaatggtaacaaattgccccccttcaagcctactcatggcctccgacaaggtgacccattgtctccctacctcttcattctttg 26587365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 38348466 - 38348557
Alignment:
Q  17 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttc 108  Q
    ||||||||||||||||||||||||||||| ||  | || || |  | |||||| ||||||||||| ||||  ||| | ||||||||||||||    
T  38348466 gacatcaccatcaagctcatcatgcattgtgttacctcacccaccttctctatcctttggaatggcaacagattgtctcctttcaagccttc 38348557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 270
Target Start/End: Original strand, 14760016 - 14760174
Alignment:
Q  112 tggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcacggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgg 211  Q
    |||||| || ||||| |||||||||||||| || || ||||| ||||| | ||||||||| ||   ||||||||| ||||| |||   |||||||| |||    
T  14760016 tggccttcgccaaggagatccgttgtccccatacctcttcattctttgtatggaaaagctctctattgctataaattcagcggtcaatcaaggaagttgg 14760115  T
Q  212 gcacccatccaaatcacccctacggggccgcatttatcccatctcctatttgcagatga 270  Q
    | |||  | ||||||||   ||||||||| ||  |||| || || ||||||||||||||    
T  14760116 gaaccggttcaaatcacaaatacggggccccagatatctcacctactatttgcagatga 14760174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 14653827 - 14653575
Alignment:
Q  18 acatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14653827 acatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttctcatggcct 14653728  T
Q  118 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcacggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcaccc 217  Q
    || ||||||||||||||||||||||||| ||||||||||||||| ||||||||| || |||||||||||||||||||| |||||||||||||||||||||    
T  14653727 ccaacaaggtgatccgttgtccccttattttttcatcctttgcatggaaaagctatccgctgctataaactcagcagttgcccaaggaagatgggcaccc 14653628  T
Q  218 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatga 270  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14653627 atccaaatcactcctacggggccgcatttatcccatctcctatttgcagatga 14653575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 171
Target Start/End: Original strand, 26791322 - 26791471
Alignment:
Q  22 caccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccga 121  Q
    |||||||||||||||||||||||||||  ||||  | || | |||||| ||||||||||| || | |||||| |||||| ||||| | ||||||||| |     
T  26791322 caccatcaagctcatcatgcattgcgttacttcatccagcttctctattctttggaatggaaataggttgcctcctttcgagcctactcatggcctcagg 26791421  T
Q  122 caaggtgatccgttgtccccttatcttttcatcctttgcacggaaaagct 171  Q
    || ||||||||| | ||||| || ||||| || ||||||| ||| |||||    
T  26791422 cagggtgatccgctttccccgtacctttttattctttgcatggagaagct 26791471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 156
Target Start/End: Original strand, 40328174 - 40328313
Alignment:
Q  17 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcc 116  Q
    ||||| |||||||| |||||||||||||| ||  | || ||||| ||||| ||  | |||||||| |||||| |  | |||||||||||| | ||||| |    
T  40328174 gacattaccatcaaactcatcatgcattgtgttacctcaccgagctactcaattttatggaatggaaacaagctttctcctttcaagcctactcatggac 40328273  T
Q  117 tccgacaaggtgatccgttgtccccttatcttttcatcct 156  Q
    | || |||||||| |||||||| |||||||||||||||||    
T  40328274 ttcgtcaaggtgacccgttgtctccttatcttttcatcct 40328313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 35135370 - 35135231
Alignment:
Q  17 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcc 116  Q
    ||||| |||||||| |||||||||||||| ||  | || || || ||||| ||  | |||||||| |||||| |  | |||||||||||| | ||||| |    
T  35135370 gacattaccatcaaactcatcatgcattgtgttacctcaccaagctactcaattttatggaatggaaacaagctctctcctttcaagcctactcatggac 35135271  T
Q  117 tccgacaaggtgatccgttgtccccttatcttttcatcct 156  Q
    | || |||||||| |||||||| |||||||||||||||||    
T  35135270 ttcgtcaaggtgacccgttgtctccttatcttttcatcct 35135231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 183
Target Start/End: Original strand, 16322502 - 16322611
Alignment:
Q  74 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcacggaaaagcttt 173  Q
    |||||||| |||||| |||| |||||||||||  | |||||||| ||||||||||| ||| | || || || |||||||| ||||||| |||||| ||||    
T  16322502 tggaatggaaacaagatgcctcctttcaagcccactcatggccttcgacaaggtgacccgctttctccgtaccttttcatactttgcatggaaaaacttt 16322601  T
Q  174 cagctgctat 183  Q
    | | ||||||    
T  16322602 ctgttgctat 16322611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 171
Target Start/End: Original strand, 573245 - 573342
Alignment:
Q  74 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcacggaaaagct 171  Q
    |||||||| |||||  |||  ||||| || ||||| ||||||||| |||||||||||||| | || ||||| || ||||||||||||| ||| |||||    
T  573245 tggaatggtaacaaaatgcatccttttaaaccttcccatggcctcagacaaggtgatccgctctctccttacctattcatcctttgcatggagaagct 573342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 3779199 - 3779060
Alignment:
Q  17 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcc 116  Q
    ||||| |||||||| |||||||||||||| ||  | || || || |||||  |  | |||||||| |||||| |  | |||||||||||| | ||||| |    
T  3779199 gacattaccatcaaactcatcatgcattgtgttacctcaccaagctactcattgttatggaatggaaacaagctctctcctttcaagcctactcatggac 3779100  T
Q  117 tccgacaaggtgatccgttgtccccttatcttttcatcct 156  Q
    | || |||||||| ||| |||| |||||||||||||||||    
T  3779099 ttcgtcaaggtgacccgctgtctccttatcttttcatcct 3779060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 156
Target Start/End: Original strand, 19265469 - 19265551
Alignment:
Q  74 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcct 156  Q
    |||||||| |||||| |  | |||||||||||| | ||||| || || |||||||| ||| |||| |||||||||||||||||    
T  19265469 tggaatggaaacaagctctctcctttcaagcctactcatggacttcgtcaaggtgacccgctgtctccttatcttttcatcct 19265551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 171
Target Start/End: Original strand, 177504 - 177649
Alignment:
Q  26 atcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaag 125  Q
    ||||| |||||||||||||| ||  ||||| | |  | |||| | ||||||||||| ||||| | ||| ||| |||||||| | ||||| ||  ||||||    
T  177504 atcaaactcatcatgcattgtgtcacttcttcaacattctctgttctttggaatggaaacaaatggcctcctatcaagcctactcatggtctaagacaag 177603  T
Q  126 gtgatccgttgtccccttatcttttcatcctttgcacggaaaagct 171  Q
    |||| || ||||| ||||| || |||||| | |||| |||||||||    
T  177604 gtgaccctttgtctccttacctattcatcatctgcatggaaaagct 177649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 20284849 - 20285101
Alignment:
Q  18 acatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcct 117  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||   ||||||||||||| ||||||| ||||||||    
T  20284849 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaaagggttgccgcctttcgagccttctcatggcct 20284948  T
Q  118 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcacggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcaccc 217  Q
     ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  20284949 gcgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgggcaccc 20285048  T
Q  218 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatga 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20285049 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatga 20285101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 16 - 154
Target Start/End: Complemental strand, 50236717 - 50236579
Alignment:
Q  16 ggacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggc 115  Q
    ||||||||||| ||| |||||||||||||| ||  | || || |  ||||||||  | ||||| ||||||||| |||| |||||||||||| | ||||||    
T  50236717 ggacatcaccaccaaactcatcatgcattgtgtctcctcacccacctactctatcttatggaacgggaacaagatgccccctttcaagcctactcatggc 50236618  T
Q  116 ctccgacaaggtgatccgttgtccccttatcttttcatc 154  Q
    ||| || ||||||||||| | |||||||| |||||||||    
T  50236617 ctcagataaggtgatccgctttccccttaccttttcatc 50236579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 159
Target Start/End: Original strand, 50451893 - 50452036
Alignment:
Q  16 ggacatcaccatcaagctcatcatgcattgcgt-agcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatgg 114  Q
    ||||||||||||||| || ||||||||||| || | || |||| | || ||||||  | |||||||| |||||  |||||| |||||| ||| | |||||    
T  50451893 ggacatcaccatcaaacttatcatgcattgtgtcacctcctcc-actttctctatcttatggaatggtaacaaaatgccgcatttcaaacctacacatgg 50451991  T
Q  115 cctccgacaaggtgatccgttgtccccttatcttttcatcctttg 159  Q
    ||||||||||||||||||| | || ||||| || ||||| |||||    
T  50451992 cctccgacaaggtgatccgctttctccttacctcttcattctttg 50452036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 132
Target Start/End: Original strand, 23465403 - 23465461
Alignment:
Q  74 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatcc 132  Q
    |||||||| ||||| ||||||| |||||||||| | ||||| || ||||||||||||||    
T  23465403 tggaatggtaacaaattgccgcatttcaagcctactcatggtcttcgacaaggtgatcc 23465461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 17 - 168
Target Start/End: Complemental strand, 54477558 - 54477407
Alignment:
Q  17 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcc 116  Q
    ||||||||||||||||||||||||||||| ||  | ||  | |  |||| ||| ||||||||||| |||||| | ||  ||||||||||| | ||||| |    
T  54477558 gacatcaccatcaagctcatcatgcattgtgtttcatcatcaaaatactttatcctttggaatggaaacaagcttccatctttcaagcctacacatggtc 54477459  T
Q  117 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcacggaaaa 168  Q
    | || ||||||||||| |||||||||||||| ||||| ||||||| ||||||    
T  54477458 tgcgccaaggtgatcctttgtccccttatctcttcattctttgcatggaaaa 54477407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 174
Target Start/End: Original strand, 14307826 - 14307936
Alignment:
Q  64 ctctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcacg 163  Q
    |||||| |||||||||||||||||| |||  ||||| |||||||| ||||||||| ||||||| |||||    || ||||| ||||||||| |||| | |    
T  14307826 ctctattctttggaatgggaacaagatgcatccttttaagccttcccatggcctcagacaaggagatcctccctcgccttaccttttcatcatttgtatg 14307925  T
Q  164 gaaaagctttc 174  Q
    ||||| |||||    
T  14307926 gaaaaactttc 14307936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 14291777 - 14291845
Alignment:
Q  64 ctctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatcc 132  Q
    |||||| |||||||||||||||||| |||  ||||| |||||||| ||||||||| ||||||| |||||    
T  14291777 ctctattctttggaatgggaacaagatgcatccttttaagccttcccatggcctcagacaaggagatcc 14291845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 33803974 - 33804065
Alignment:
Q  17 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttc 108  Q
    ||||||||||||||||||||||||||||| ||  | ||  | |  ||||||||||| |||||||| |||||  |||| ||||||||||||||    
T  33803974 gacatcaccatcaagctcatcatgcattgtgtttcctcatctacatactctatactgtggaatggaaacaaaatgcctcctttcaagccttc 33804065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 171
Target Start/End: Original strand, 3881771 - 3881868
Alignment:
Q  74 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcacggaaaagct 171  Q
    |||||||| |||||  |||||| |||||| ||| | |||||||||||||||||||||||| | || | ||| || ||||| ||||| | |||||||||    
T  3881771 tggaatggtaacaaaatgccgcatttcaaacctacacatggcctccgacaaggtgatccgctttctctttacctcttcattctttgtatggaaaagct 3881868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 174
Target Start/End: Complemental strand, 46784621 - 46784469
Alignment:
Q  22 caccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccga 121  Q
    |||||||||||||||||||||||| ||  | ||  | | || |||  | ||||||||||| || || |||||||||||||| ||| | ||||||||  ||    
T  46784621 caccatcaagctcatcatgcattgtgttacgtcatcaactttctccgtcctttggaatggaaataaattgccgcctttcaaacctactcatggccttaga 46784522  T
Q  122 caaggtgatccgttgtccccttatcttttcatcctttgcacggaaaagctttc 174  Q
    |||||||||||  | || || || || ||||||||||||| | |||| |||||    
T  46784521 caaggtgatcctctatctccctacctcttcatcctttgcatgaaaaaactttc 46784469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 75967 - 76057
Alignment:
Q  81 ggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcacggaaaagct 171  Q
    |||||||| ||||  | ||||||||| | ||||| ||| |||||||||| | ||||||||||||||||||||||||||||| |||||||||    
T  75967 ggaacaagctgccttccttcaagcctactcatggtctcagacaaggtgaccagttgtccccttatcttttcatcctttgcatggaaaagct 76057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 65 - 171
Target Start/End: Complemental strand, 32874563 - 32874457
Alignment:
Q  65 tctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcacgg 164  Q
    ||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||| ||||| || ||| | || || ||| | |||||| |||||| ||    
T  32874563 tctatcctttgaaatgggaacaagttgcctcctttcaagccttctcatggcctccgccaaggagacccgctctctccctatttattcatcatttgcatgg 32874464  T
Q  165 aaaagct 171  Q
    |||||||    
T  32874463 aaaagct 32874457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 171
Target Start/End: Original strand, 7817131 - 7817285
Alignment:
Q  17 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcc 116  Q
    |||||||| |||||||||||||||||||| ||| | ||  | |  ||||||||  | ||||||||||||||  | ||  ||||||||||| | ||||| |    
T  7817131 gacatcacaatcaagctcatcatgcattgtgtatcatcctccaactactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtc 7817230  T
Q  117 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcacggaaaagct 171  Q
    || |||| ||||| || || || ||||| |||||||| ||||||| |||||||||    
T  7817231 tcagacagggtgaccctttatctccttaccttttcattctttgcatggaaaagct 7817285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 174
Target Start/End: Complemental strand, 24893990 - 24893833
Alignment:
Q  17 gacatcaccatcaagctcatcatgcattgcgt-agcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggc 115  Q
    ||||||||||||||||||||||||||||| || | || ||||   || ||| ||| | |||||||| |||||  |||| |||||||||||  | |||||     
T  24893990 gacatcaccatcaagctcatcatgcattgtgtcacctcctccacatt-ctccatattatggaatggtaacaaaatgccccctttcaagcccacacatggt 24893892  T
Q  116 ctccgacaaggtgatccgttgtccccttatcttttcatcctttgcacggaaaagctttc 174  Q
    ||| |||||||||| ||| | || |||||||||||||| || |||| ||||||||||||    
T  24893891 ctcagacaaggtgacccgctctctccttatcttttcatactatgcatggaaaagctttc 24893833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 174
Target Start/End: Complemental strand, 24990744 - 24990660
Alignment:
Q  90 tgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcacggaaaagctttc 174  Q
    |||| |||||||||||  | ||||| ||| |||||||||| ||| | || |||||||||||||| ||||||| ||| ||||||||    
T  24990744 tgccccctttcaagcccacccatggtctcagacaaggtgacccgctctctccttatcttttcattctttgcatggagaagctttc 24990660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 180
Target Start/End: Original strand, 13599639 - 13599745
Alignment:
Q  74 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcacggaaaagcttt 173  Q
    |||||||| |||||||| ||||  ||||||||| | ||||  ||||| |||||||||||  | || |||||||| |||||| | || | |||||| ||||    
T  13599639 tggaatggtaacaagtttccgcaattcaagcctactcatgatctccgtcaaggtgatcctctttcaccttatctcttcatcttgtgtatggaaaaacttt 13599738  T
Q  174 cagctgc 180  Q
    |||||||    
T  13599739 cagctgc 13599745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 35233542 - 35233599
Alignment:
Q  74 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatc 131  Q
    |||||||| |||||||||||   |||||||||| | ||||| ||||||||||||||||    
T  35233542 tggaatggaaacaagttgcctaatttcaagcctacacatggtctccgacaaggtgatc 35233599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 16770059 - 16769979
Alignment:
Q  74 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatc 154  Q
    |||||||| ||||| ||||||| |||||| ||| | ||||| || ||||||||||||||  | || |||||||| ||||||    
T  16770059 tggaatggtaacaaattgccgcatttcaaacctactcatggtcttcgacaaggtgatcctctttcaccttatctcttcatc 16769979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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