View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11293A_low_139 (Length: 270)

Name: NF11293A_low_139
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11293A_low_139
NF11293A_low_139
[»] chr8 (15 HSPs)
chr8 (111-265)||(44240408-44240562)
chr8 (131-265)||(30982886-30983020)
chr8 (131-265)||(34774105-34774239)
chr8 (131-265)||(30210870-30211004)
chr8 (131-265)||(193673-193807)
chr8 (131-265)||(721277-721411)
chr8 (131-265)||(882384-882518)
chr8 (4-46)||(44240627-44240669)
chr8 (5-46)||(193895-193936)
chr8 (5-46)||(629223-629264)
chr8 (5-46)||(721499-721540)
chr8 (5-46)||(882606-882647)
chr8 (5-46)||(30982756-30982797)
chr8 (5-46)||(30211093-30211134)
chr8 (5-46)||(34773975-34774016)
[»] chr5 (12 HSPs)
chr5 (111-265)||(27738206-27738360)
chr5 (111-265)||(33232743-33232897)
chr5 (111-262)||(7071675-7071826)
chr5 (131-265)||(29542097-29542231)
chr5 (131-265)||(42663663-42663797)
chr5 (131-243)||(3260613-3260725)
chr5 (4-46)||(27738099-27738141)
chr5 (4-46)||(33232962-33233004)
chr5 (5-46)||(7071567-7071608)
chr5 (5-46)||(3260483-3260524)
chr5 (5-46)||(29541967-29542008)
chr5 (5-46)||(42663886-42663927)
[»] chr4 (13 HSPs)
chr4 (111-265)||(56560794-56560948)
chr4 (111-265)||(52056636-52056790)
chr4 (131-265)||(24035877-24036011)
chr4 (131-265)||(24246833-24246967)
chr4 (131-195)||(49128014-49128078)
chr4 (131-195)||(51834045-51834109)
chr4 (5-46)||(24035747-24035788)
chr4 (5-46)||(24247056-24247097)
chr4 (5-46)||(39382565-39382606)
chr4 (131-184)||(39382695-39382748)
chr4 (5-46)||(49128167-49128208)
chr4 (6-45)||(51833916-51833955)
chr4 (17-46)||(56561013-56561042)
[»] chr1 (21 HSPs)
chr1 (111-265)||(46407774-46407928)
chr1 (111-265)||(35606616-35606770)
chr1 (131-265)||(5271282-5271416)
chr1 (131-265)||(7592981-7593115)
chr1 (131-265)||(50978602-50978736)
chr1 (131-265)||(51488151-51488285)
chr1 (131-237)||(38843631-38843737)
chr1 (135-209)||(27576188-27576262)
chr1 (131-205)||(27000067-27000141)
chr1 (4-46)||(35606837-35606879)
chr1 (5-46)||(46407993-46408034)
chr1 (5-46)||(5271152-5271193)
chr1 (5-46)||(7592851-7592892)
chr1 (5-46)||(15353669-15353710)
chr1 (5-46)||(26821846-26821887)
chr1 (5-46)||(26999937-26999978)
chr1 (5-46)||(38843826-38843867)
chr1 (5-46)||(50978472-50978513)
chr1 (5-46)||(51488021-51488062)
chr1 (131-177)||(15353534-15353580)
chr1 (6-44)||(27576357-27576395)
[»] chr2 (14 HSPs)
chr2 (111-265)||(13896285-13896439)
chr2 (111-265)||(14036902-14037056)
chr2 (131-265)||(14380393-14380527)
chr2 (131-265)||(31686596-31686730)
chr2 (131-265)||(31786936-31787070)
chr2 (131-237)||(40254824-40254930)
chr2 (132-204)||(2443209-2443280)
chr2 (4-46)||(13896501-13896543)
chr2 (4-46)||(14037118-14037160)
chr2 (5-46)||(14380616-14380657)
chr2 (5-46)||(31686466-31686507)
chr2 (5-46)||(31787159-31787200)
chr2 (5-46)||(40255019-40255060)
chr2 (6-45)||(2443079-2443118)
[»] chr6 (6 HSPs)
chr6 (111-265)||(21515346-21515500)
chr6 (131-265)||(30019506-30019640)
chr6 (131-209)||(31745993-31746072)
chr6 (4-46)||(21515239-21515281)
chr6 (5-46)||(30019729-30019770)
chr6 (6-46)||(31745864-31745904)
[»] chr3 (10 HSPs)
chr3 (131-265)||(51125046-51125180)
chr3 (131-265)||(52692828-52692962)
chr3 (131-265)||(38469469-38469603)
chr3 (131-233)||(1527826-1527928)
chr3 (131-185)||(47141026-47141080)
chr3 (5-46)||(1528017-1528058)
chr3 (5-46)||(38469692-38469733)
chr3 (5-46)||(47140896-47140937)
chr3 (5-46)||(51124916-51124957)
chr3 (5-46)||(52693051-52693092)
[»] chr7 (9 HSPs)
chr7 (131-236)||(31012272-31012377)
chr7 (131-233)||(25341253-25341355)
chr7 (131-209)||(41064825-41064903)
chr7 (111-172)||(12910305-12910366)
chr7 (4-46)||(12910431-12910473)
chr7 (5-46)||(31012142-31012183)
chr7 (125-169)||(12910268-12910312)
chr7 (9-46)||(25341127-25341164)
chr7 (6-46)||(41064992-41065032)


Alignment Details
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 111 - 265
Target Start/End: Complemental strand, 44240562 - 44240408
Alignment:
Q  111 ttaaattgcaacaaagtactaatattattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaagaacaatactaattat 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44240562 ttaaattgcaacaaagtactaatattattacaaaactaatttaaagtgtattatagtactaaaatattgatataataatttaaagaacaatactaattat 44240463  T
Q  211 tttgcctgtgctcaataatttcattgcggattatgtttcgaacgcgattcatctc 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44240462 tttgcctgtgctcaataatttcattgcggattatgtttcgaacgcgatccatctc 44240408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 131 - 265
Target Start/End: Original strand, 30982886 - 30983020
Alignment:
Q  131 aatattattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaagaacaatactaattattttgcctgtgctcaataatt 230  Q
    |||||||||||||||||||  ||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30982886 aatattattacaaaactaacataatgtgtattatagtactaaaatattgatataataatttaaagtacaatactaattattttgcctgtgctcaataatt 30982985  T
Q  231 tcattgcggattatgtttcgaacgcgattcatctc 265  Q
    |||||||||||||||||||||||||||| ||||||    
T  30982986 tcattgcggattatgtttcgaacgcgatccatctc 30983020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 131 - 265
Target Start/End: Original strand, 34774105 - 34774239
Alignment:
Q  131 aatattattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaagaacaatactaattattttgcctgtgctcaataatt 230  Q
    |||||||||||||||||||  ||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  34774105 aatattattacaaaactaacataatgtgtattatagtactaaaatattgatataataatttaaagtacaatactaattattttgcctgtgctcaataatt 34774204  T
Q  231 tcattgcggattatgtttcgaacgcgattcatctc 265  Q
    |||||||||||||||||||||||||||| ||||||    
T  34774205 tcattgcggattatgtttcgaacgcgatccatctc 34774239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 131 - 265
Target Start/End: Complemental strand, 30211004 - 30210870
Alignment:
Q  131 aatattattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaagaacaatactaattattttgcctgtgctcaataatt 230  Q
    |||||||||||||||||||  ||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30211004 aatattattacaaaactaacataatgtgtattatagtactaaaatattgatataataatttaaagtacaatactaattattttgcctgtgctcaataatt 30210905  T
Q  231 tcattgcggattatgtttcgaacgcgattcatctc 265  Q
    ||||||||||||||||||| |||||||| ||||||    
T  30210904 tcattgcggattatgtttcaaacgcgatccatctc 30210870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 131 - 265
Target Start/End: Complemental strand, 193807 - 193673
Alignment:
Q  131 aatattattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaagaacaatactaattattttgcctgtgctcaataatt 230  Q
    |||||||| ||||||||||  ||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  193807 aatattatcacaaaactaacataatgtgtattatagtactaaaatattgatataataatttaaagtacaatactaattattttgcatgtgctcaataatt 193708  T
Q  231 tcattgcggattatgtttcgaacgcgattcatctc 265  Q
    |||||||||||||||||||||||||||| ||||||    
T  193707 tcattgcggattatgtttcgaacgcgatccatctc 193673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 131 - 265
Target Start/End: Complemental strand, 721411 - 721277
Alignment:
Q  131 aatattattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaagaacaatactaattattttgcctgtgctcaataatt 230  Q
    |||||||| ||||||||||  ||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  721411 aatattatcacaaaactaacataatgtgtattatagtactaaaatattgatataataatttaaagtacaatactaattattttgcatgtgctcaataatt 721312  T
Q  231 tcattgcggattatgtttcgaacgcgattcatctc 265  Q
    |||||||||||||||||||||||||||| ||||||    
T  721311 tcattgcggattatgtttcgaacgcgatccatctc 721277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 131 - 265
Target Start/End: Complemental strand, 882518 - 882384
Alignment:
Q  131 aatattattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaagaacaatactaattattttgcctgtgctcaataatt 230  Q
    |||||||| ||||||||||  ||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  882518 aatattatcacaaaactaacataatgtgtattatagtactaaaatattgatataataatttaaagtacaatactaattattttgcatgtgctcaataatt 882419  T
Q  231 tcattgcggattatgtttcgaacgcgattcatctc 265  Q
    |||||||||||||||||||||||||||| ||||||    
T  882418 tcattgcggattatgtttcgaacgcgatccatctc 882384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 44240669 - 44240627
Alignment:
Q  4 ctaaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  44240669 ctaaataaaaattactaaattaggataattaagtgcaatatag 44240627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 193936 - 193895
Alignment:
Q  5 taaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  193936 taaatagaaattactaaattaagataattaagtgcaatatag 193895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 629264 - 629223
Alignment:
Q  5 taaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  629264 taaatagaaattactaaattaagataattaagtgcaatatag 629223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 721540 - 721499
Alignment:
Q  5 taaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  721540 taaatagaaattactaaattaagataattaagtgcaatatag 721499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 882647 - 882606
Alignment:
Q  5 taaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  882647 taaatagaaattactaaattaagataattaagtgcaatatag 882606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 30982756 - 30982797
Alignment:
Q  5 taaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  30982756 taaatagaaattactaaattaagataattaagtgcaatatag 30982797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 30211134 - 30211093
Alignment:
Q  5 taaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    ||||||||||||||||||||| || |||||||||||||||||    
T  30211134 taaatagaaattactaaattaagacaattaagtgcaatatag 30211093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 34773975 - 34774016
Alignment:
Q  5 taaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    ||||||||||| ||||||||| ||||||||||||||||||||    
T  34773975 taaatagaaatgactaaattaagataattaagtgcaatatag 34774016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 111 - 265
Target Start/End: Original strand, 27738206 - 27738360
Alignment:
Q  111 ttaaattgcaacaaagtactaatattattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaagaacaatactaattat 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27738206 ttaaattgcaacaaagtactaatattattacaaaactaatttaaagtgtattatagtactaaaatattgatataataatttaaagaacaatactaattat 27738305  T
Q  211 tttgcctgtgctcaataatttcattgcggattatgtttcgaacgcgattcatctc 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27738306 tttgcctgtgctcaataatttcattgcggattatgtttcgaacgcgatccatctc 27738360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 111 - 265
Target Start/End: Complemental strand, 33232897 - 33232743
Alignment:
Q  111 ttaaattgcaacaaagtactaatattattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaagaacaatactaattat 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  33232897 ttaaattgcaacaaagtactaatattattacaaaactaatttaaagtgtattatagtactaaaatattgatataataatttaaaaaacaatactaattat 33232798  T
Q  211 tttgcctgtgctcaataatttcattgcggattatgtttcgaacgcgattcatctc 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33232797 tttgcctgtgctcaataatttcattgcggattatgtttcgaacgcgatccatctc 33232743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 111 - 262
Target Start/End: Original strand, 7071675 - 7071826
Alignment:
Q  111 ttaaattgcaacaaagtactaatattattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaagaacaatactaattat 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7071675 ttaaattgcaacaaagtactaatattattacaaaactaatttaaagtgtattatggtactaaaatattgatataataatttaaagaacaatactaattat 7071774  T
Q  211 tttgcctgtgctcaataatttcattgcggattatgtttcgaacgcgattcat 262  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  7071775 tttgcctgtgctcaataatttcattccggattatgtttcgaacgtgattcat 7071826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 131 - 265
Target Start/End: Original strand, 29542097 - 29542231
Alignment:
Q  131 aatattattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaagaacaatactaattattttgcctgtgctcaataatt 230  Q
    |||||||||||||||||||  ||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29542097 aatattattacaaaactaacataatgtgtattatagtactaaaatattgatataataatttaaagtacaatactaattattttgcctgtgctcaataatt 29542196  T
Q  231 tcattgcggattatgtttcgaacgcgattcatctc 265  Q
    |||||||||||||||||||||||||||| ||||||    
T  29542197 tcattgcggattatgtttcgaacgcgatccatctc 29542231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 131 - 265
Target Start/End: Complemental strand, 42663797 - 42663663
Alignment:
Q  131 aatattattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaagaacaatactaattattttgcctgtgctcaataatt 230  Q
    |||||||||||||||||||  ||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  42663797 aatattattacaaaactaacataatgtgtattatagtactaaaatattgatataataatttaaagtacaatactaattattttgcctgtgctcaataatt 42663698  T
Q  231 tcattgcggattatgtttcgaacgcgattcatctc 265  Q
    |||||||||||||||||||||||||| | ||||||    
T  42663697 tcattgcggattatgtttcgaacgcggtccatctc 42663663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 131 - 243
Target Start/End: Original strand, 3260613 - 3260725
Alignment:
Q  131 aatattattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaagaacaatactaattattttgcctgtgctcaataatt 230  Q
    |||||||||||||||||||  ||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3260613 aatattattacaaaactaacataatgtgtattatagtactaaaatattgatataataatttaaagtacaatactaattattttgcctgtgctcaataatt 3260712  T
Q  231 tcattgcggatta 243  Q
    |||||||||||||    
T  3260713 tcattgcggatta 3260725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 27738099 - 27738141
Alignment:
Q  4 ctaaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  27738099 ctaaatagaaattactaaattaggataattaagtgcaatatag 27738141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 33233004 - 33232962
Alignment:
Q  4 ctaaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  33233004 ctaaatagaaattactaaattaggataattaagtgcaatatag 33232962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 7071567 - 7071608
Alignment:
Q  5 taaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  7071567 taaatagaaattactaaattaggataattaagtgcaatatag 7071608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 3260483 - 3260524
Alignment:
Q  5 taaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  3260483 taaatagaaattactaaattaagataattaagtgcaatatag 3260524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 29541967 - 29542008
Alignment:
Q  5 taaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  29541967 taaatagaaattactaaattaagataattaagtgcaatatag 29542008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 42663927 - 42663886
Alignment:
Q  5 taaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  42663927 taaatagaaattactaaattaagataattaagtgcaatatag 42663886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 111 - 265
Target Start/End: Complemental strand, 56560948 - 56560794
Alignment:
Q  111 ttaaattgcaacaaagtactaatattattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaagaacaatactaattat 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56560948 ttaaattgcaacaaagtactaatattattacaaaactaatttaaagtgtattatagtactaaaatattgatataataatttaaagaacaatactaattat 56560849  T
Q  211 tttgcctgtgctcaataatttcattgcggattatgtttcgaacgcgattcatctc 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  56560848 tttgcctgtgctcaataatttcattgcggattatgtttcgaacgcgatccatctc 56560794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 111 - 265
Target Start/End: Original strand, 52056636 - 52056790
Alignment:
Q  111 ttaaattgcaacaaagtactaatattattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaagaacaatactaattat 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||| |||||||    
T  52056636 ttaaattgcaacaaagtactaatattattacaaaactaatttaaagtgtattatggtattaaaatattgatataataatttaaagaacaatattaattat 52056735  T
Q  211 tttgcctgtgctcaataatttcattgcggattatgtttcgaacgcgattcatctc 265  Q
    ||||| ||||||||||||||| ||||| |||||||||||||||| ||| ||||||    
T  52056736 tttgcatgtgctcaataatttgattgcagattatgtttcgaacgtgatccatctc 52056790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 131 - 265
Target Start/End: Original strand, 24035877 - 24036011
Alignment:
Q  131 aatattattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaagaacaatactaattattttgcctgtgctcaataatt 230  Q
    |||||||||||||||||||  ||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24035877 aatattattacaaaactaacataatgtgtattatagtactaaaatattgatataataatttaaagtacaatactaattattttgcctgtgctcaataatt 24035976  T
Q  231 tcattgcggattatgtttcgaacgcgattcatctc 265  Q
    |||||||||||||||||||||||||||| ||||||    
T  24035977 tcattgcggattatgtttcgaacgcgatccatctc 24036011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 131 - 265
Target Start/End: Complemental strand, 24246967 - 24246833
Alignment:
Q  131 aatattattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaagaacaatactaattattttgcctgtgctcaataatt 230  Q
    |||||||||||||||||||  ||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24246967 aatattattacaaaactaacataatgtgtattatagtactaaaatattgatataataatttaaagtacaatactaattattttgcctgtgctcaataatt 24246868  T
Q  231 tcattgcggattatgtttcgaacgcgattcatctc 265  Q
    |||||||||||||||||||||||||||| ||||||    
T  24246867 tcattgcggattatgtttcgaacgcgatccatctc 24246833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 195
Target Start/End: Complemental strand, 49128078 - 49128014
Alignment:
Q  131 aatattattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaag 195  Q
    |||||||||||||||||||  ||| ||| ||||||||||||||||||||||||||||||||||||    
T  49128078 aatattattacaaaactaacataatgtgtattatagtactaaaatattgatataataatttaaag 49128014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 51834045 - 51834109
Alignment:
Q  131 aatattattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaag 195  Q
    ||||| |||||||||||||||||| ||| || ||| |||||||||||||||||||||||||||||    
T  51834045 aatataattacaaaactaatttaatgtgtatcataatactaaaatattgatataataatttaaag 51834109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 24035747 - 24035788
Alignment:
Q  5 taaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  24035747 taaatagaaattactaaattaagataattaagtgcaatatag 24035788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 24247097 - 24247056
Alignment:
Q  5 taaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  24247097 taaatagaaattactaaattaagataattaagtgcaatatag 24247056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 39382565 - 39382606
Alignment:
Q  5 taaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  39382565 taaatagaaattactaaattaagataattaagtgcaatatag 39382606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 39382695 - 39382748
Alignment:
Q  131 aatattattacaaaactaatttaaagtgaattatagtactaaaatattgatata 184  Q
    |||||||||||||||||||  ||| ||| |||||||||||||||||||||||||    
T  39382695 aatattattacaaaactaacataatgtgtattatagtactaaaatattgatata 39382748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 49128208 - 49128167
Alignment:
Q  5 taaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  49128208 taaatagaaattactaaattaagataattaagtgcaatatag 49128167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 45
Target Start/End: Original strand, 51833916 - 51833955
Alignment:
Q  6 aaatagaaattactaaattaggataattaagtgcaatata 45  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  51833916 aaatagaaattactaaattaagataattaagtgcaatata 51833955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 56561042 - 56561013
Alignment:
Q  17 actaaattaggataattaagtgcaatatag 46  Q
    ||||||||||||||||||||||||||||||    
T  56561042 actaaattaggataattaagtgcaatatag 56561013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 111 - 265
Target Start/End: Complemental strand, 46407928 - 46407774
Alignment:
Q  111 ttaaattgcaacaaagtactaatattattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaagaacaatactaattat 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46407928 ttaaattgcaacaaagtactaatattattacaaaactaatttaaagtgtattatagtactaaaatattgatataataatttaaagaacaatactaattat 46407829  T
Q  211 tttgcctgtgctcaataatttcattgcggattatgtttcgaacgcgattcatctc 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  46407828 tttgcctgtgctcaataatttcattgcggattatgtttcgaacgcgatccatctc 46407774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 111 - 265
Target Start/End: Complemental strand, 35606770 - 35606616
Alignment:
Q  111 ttaaattgcaacaaagtactaatattattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaagaacaatactaattat 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35606770 ttaaattgcaacaaagtactaatattattacaaaactaatttaaagtgtattatagtactaaaatattgatataataatttaaagaacaatactaattat 35606671  T
Q  211 tttgcctgtgctcaataatttcattgcggattatgtttcgaacgcgattcatctc 265  Q
    ||||| ||||||||||||||| ||||||| |||||||||||| | ||| ||||||    
T  35606670 tttgcatgtgctcaataatttgattgcgggttatgtttcgaatgtgatccatctc 35606616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 131 - 265
Target Start/End: Original strand, 5271282 - 5271416
Alignment:
Q  131 aatattattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaagaacaatactaattattttgcctgtgctcaataatt 230  Q
    |||||||||||||||||||  ||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5271282 aatattattacaaaactaacataatgtgtattatagtactaaaatattgatataataatttaaagtacaatactaattattttgcctgtgctcaataatt 5271381  T
Q  231 tcattgcggattatgtttcgaacgcgattcatctc 265  Q
    |||||||||||||||||||||||||||| ||||||    
T  5271382 tcattgcggattatgtttcgaacgcgatccatctc 5271416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 131 - 265
Target Start/End: Original strand, 7592981 - 7593115
Alignment:
Q  131 aatattattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaagaacaatactaattattttgcctgtgctcaataatt 230  Q
    |||||||||||||||||||  ||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7592981 aatattattacaaaactaacataatgtgtattatagtactaaaatattgatataataatttaaagtacaatactaattattttgcctgtgctcaataatt 7593080  T
Q  231 tcattgcggattatgtttcgaacgcgattcatctc 265  Q
    |||||||||||||||||||||||||||| ||||||    
T  7593081 tcattgcggattatgtttcgaacgcgatccatctc 7593115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 131 - 265
Target Start/End: Original strand, 50978602 - 50978736
Alignment:
Q  131 aatattattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaagaacaatactaattattttgcctgtgctcaataatt 230  Q
    |||||||||||||||||||  ||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  50978602 aatattattacaaaactaacataatgtgtattatagtactaaaatattgatataataatttaaagtacaatactaattattttgcctgtgctcaataatt 50978701  T
Q  231 tcattgcggattatgtttcgaacgcgattcatctc 265  Q
    |||||||||||||||||||||||||||| ||||||    
T  50978702 tcattgcggattatgtttcgaacgcgatccatctc 50978736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 131 - 265
Target Start/End: Original strand, 51488151 - 51488285
Alignment:
Q  131 aatattattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaagaacaatactaattattttgcctgtgctcaataatt 230  Q
    |||||||||||||||||||  ||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  51488151 aatattattacaaaactaacataatgtgtattatagtactaaaatattgatataataatttaaagtacaatactaattattttgcatgtgctcaataatt 51488250  T
Q  231 tcattgcggattatgtttcgaacgcgattcatctc 265  Q
    |||||||||||||||||||||||||||| ||||||    
T  51488251 tcattgcggattatgtttcgaacgcgatccatctc 51488285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 131 - 237
Target Start/End: Complemental strand, 38843737 - 38843631
Alignment:
Q  131 aatattattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaagaacaatactaattattttgcctgtgctcaataatt 230  Q
    |||||||||||||||||||  ||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38843737 aatattattacaaaactaacataatgtgtattatagtactaaaatattgatataataatttaaagtacaatactaattattttgcctgtgctcaataatt 38843638  T
Q  231 tcattgc 237  Q
    |||||||    
T  38843637 tcattgc 38843631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 135 - 209
Target Start/End: Complemental strand, 27576262 - 27576188
Alignment:
Q  135 ttattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaagaacaatactaatta 209  Q
    |||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| |||||||||||||    
T  27576262 ttattacaaaactaatttaatgtgtatcatagtactaaaatattgatataataatttaaagtacaatactaatta 27576188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 131 - 205
Target Start/End: Original strand, 27000067 - 27000141
Alignment:
Q  131 aatattattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaagaacaatacta 205  Q
    |||||||||||||||||||  ||| ||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  27000067 aatattattacaaaactaacataatgtgtattatagtactaaaatattgatataataatttaaagtacaatacta 27000141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 35606879 - 35606837
Alignment:
Q  4 ctaaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  35606879 ctaaatagaaattactaaattaggataattaagtgcaatatag 35606837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 46408034 - 46407993
Alignment:
Q  5 taaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  46408034 taaatagaaattactaaattaggataattaagtgcaatatag 46407993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 5271152 - 5271193
Alignment:
Q  5 taaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  5271152 taaatagaaattactaaattaagataattaagtgcaatatag 5271193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 7592851 - 7592892
Alignment:
Q  5 taaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  7592851 taaatagaaattactaaattaagataattaagtgcaatatag 7592892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 15353710 - 15353669
Alignment:
Q  5 taaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  15353710 taaatagaaattactaaattaagataattaagtgcaatatag 15353669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 26821887 - 26821846
Alignment:
Q  5 taaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  26821887 taaatagaaattactaaattaagataattaagtgcaatatag 26821846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 26999937 - 26999978
Alignment:
Q  5 taaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  26999937 taaatagaaattactaaattaagataattaagtgcaatatag 26999978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 38843867 - 38843826
Alignment:
Q  5 taaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  38843867 taaatagaaattactaaattaagataattaagtgcaatatag 38843826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 50978472 - 50978513
Alignment:
Q  5 taaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  50978472 taaatagaaattactaaattaagataattaagtgcaatatag 50978513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 51488021 - 51488062
Alignment:
Q  5 taaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  51488021 taaatagaaattactaaattaagataattaagtgcaatatag 51488062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 177
Target Start/End: Complemental strand, 15353580 - 15353534
Alignment:
Q  131 aatattattacaaaactaatttaaagtgaattatagtactaaaatat 177  Q
    |||||||||||||||||||  ||| ||| ||||||||||||||||||    
T  15353580 aatattattacaaaactaacataatgtgtattatagtactaaaatat 15353534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 27576395 - 27576357
Alignment:
Q  6 aaatagaaattactaaattaggataattaagtgcaatat 44  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  27576395 aaatagaaattactaaattaaaataattaagtgcaatat 27576357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 139; Significance: 8e-73; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 111 - 265
Target Start/End: Complemental strand, 13896439 - 13896285
Alignment:
Q  111 ttaaattgcaacaaagtactaatattattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaagaacaatactaattat 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13896439 ttaaattgcaacaaagtactaatattattacaaaactaatttaaagtgtattatagtactaaaatattgatataataatttaaagaacaatactaattat 13896340  T
Q  211 tttgcctgtgctcaataatttcattgcggattatgtttcgaacgcgattcatctc 265  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  13896339 tttgtctgtgctcaataattttattgcggattatgtttcgaacgcgatccatctc 13896285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 111 - 265
Target Start/End: Complemental strand, 14037056 - 14036902
Alignment:
Q  111 ttaaattgcaacaaagtactaatattattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaagaacaatactaattat 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14037056 ttaaattgcaacaaagtactaatattattacaaaactaatttaaagtgtattatagtactaaaatattgatataataatttaaagaacaatactaattat 14036957  T
Q  211 tttgcctgtgctcaataatttcattgcggattatgtttcgaacgcgattcatctc 265  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  14036956 tttgtctgtgctcaataattttattgcggattatgtttcgaacgcgatccatctc 14036902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 131 - 265
Target Start/End: Complemental strand, 14380527 - 14380393
Alignment:
Q  131 aatattattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaagaacaatactaattattttgcctgtgctcaataatt 230  Q
    |||||||||||||||||||  ||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  14380527 aatattattacaaaactaacataatgtgtattatagtactaaaatattgatataataatttaaagtacaatactaattattttgcctgtgctcaataatt 14380428  T
Q  231 tcattgcggattatgtttcgaacgcgattcatctc 265  Q
    |||||||||||||||||||||||||||| ||||||    
T  14380427 tcattgcggattatgtttcgaacgcgatccatctc 14380393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 131 - 265
Target Start/End: Original strand, 31686596 - 31686730
Alignment:
Q  131 aatattattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaagaacaatactaattattttgcctgtgctcaataatt 230  Q
    |||||||||||||||||||  ||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  31686596 aatattattacaaaactaacataatgtgtattatagtactaaaatattgatataataatttaaagtacaatactaattattttgcctgtgctcaataatt 31686695  T
Q  231 tcattgcggattatgtttcgaacgcgattcatctc 265  Q
    |||||||||||||||||||||||||||| ||||||    
T  31686696 tcattgcggattatgtttcgaacgcgatccatctc 31686730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 131 - 265
Target Start/End: Complemental strand, 31787070 - 31786936
Alignment:
Q  131 aatattattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaagaacaatactaattattttgcctgtgctcaataatt 230  Q
    |||||||||||||||||||  ||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  31787070 aatattattacaaaactaacataatgtgtattatagtactaaaatattgatataataatttaaagtacaatactaattattttgcctgtgctcaataatt 31786971  T
Q  231 tcattgcggattatgtttcgaacgcgattcatctc 265  Q
    |||||||||||||||||||||||||||| ||||||    
T  31786970 tcattgcggattatgtttcgaacgcgatccatctc 31786936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 131 - 237
Target Start/End: Complemental strand, 40254930 - 40254824
Alignment:
Q  131 aatattattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaagaacaatactaattattttgcctgtgctcaataatt 230  Q
    |||||||||||||||||||  ||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  40254930 aatattattacaaaactaacataatgtgtattatagtactaaaatattgatataataatttaaagtacaatactaattattttgcctgtgctcaataatt 40254831  T
Q  231 tcattgc 237  Q
    |||||||    
T  40254830 tcattgc 40254824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 2443209 - 2443280
Alignment:
Q  132 atattattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaagaacaatact 204  Q
    ||||||||||||||||||||||| ||| || ||| ||||||||||||||||||| ||||||||| ||||||||    
T  2443209 atattattacaaaactaatttaatgtgtatcataatactaaaatattgatataa-aatttaaagtacaatact 2443280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 13896543 - 13896501
Alignment:
Q  4 ctaaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  13896543 ctaaatagaaattactaaattaggataattaagtgcaatatag 13896501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 14037160 - 14037118
Alignment:
Q  4 ctaaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  14037160 ctaaatagaaattactaaattaggataattaagtgcaatatag 14037118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 14380657 - 14380616
Alignment:
Q  5 taaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  14380657 taaatagaaattactaaattaagataattaagtgcaatatag 14380616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 31686466 - 31686507
Alignment:
Q  5 taaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  31686466 taaatagaaattactaaattaagataattaagtgcaatatag 31686507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 31787200 - 31787159
Alignment:
Q  5 taaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  31787200 taaatagaaattactaaattaagataattaagtgcaatatag 31787159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 40255060 - 40255019
Alignment:
Q  5 taaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  40255060 taaatagaaattactaaattaagataattaagtgcaatatag 40255019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 45
Target Start/End: Original strand, 2443079 - 2443118
Alignment:
Q  6 aaatagaaattactaaattaggataattaagtgcaatata 45  Q
    |||||||| ||||||||||| |||||||||||||||||||    
T  2443079 aaatagaatttactaaattaagataattaagtgcaatata 2443118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 131; Significance: 5e-68; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 111 - 265
Target Start/End: Original strand, 21515346 - 21515500
Alignment:
Q  111 ttaaattgcaacaaagtactaatattattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaagaacaatactaattat 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  21515346 ttaaattgcaacaaagtactaatattattacaaaactaatttaaagtgtattatagtactaaaatattgatataataatttaaaaaacaataataattat 21515445  T
Q  211 tttgcctgtgctcaataatttcattgcggattatgtttcgaacgcgattcatctc 265  Q
     ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21515446 attgactgtgctcaataatttcattgcggattatgtttcgaacgcgatccatctc 21515500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 131 - 265
Target Start/End: Complemental strand, 30019640 - 30019506
Alignment:
Q  131 aatattattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaagaacaatactaattattttgcctgtgctcaataatt 230  Q
    |||||||||||||||||||  ||| ||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  30019640 aatattattacaaaactaacataatgtgtattatagtactaaaatattgatataataatttaaagtacaataataattattttgcctgtgctcaataatt 30019541  T
Q  231 tcattgcggattatgtttcgaacgcgattcatctc 265  Q
    |||||||||||||||||||||||||||| ||||||    
T  30019540 tcattgcggattatgtttcgaacgcgatccatctc 30019506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 31745993 - 31746072
Alignment:
Q  131 aatattattac-aaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaagaacaatactaatta 209  Q
    ||||||||||| ||||||||||||| ||| || ||||||||||||||||||||||||||||||||| |||||||||||||    
T  31745993 aatattattaccaaaactaatttaatgtgtatcatagtactaaaatattgatataataatttaaagtacaatactaatta 31746072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 21515239 - 21515281
Alignment:
Q  4 ctaaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  21515239 ctaaatagaaattactaaattaggataattaagtgcaatatag 21515281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 30019770 - 30019729
Alignment:
Q  5 taaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  30019770 taaatagaaattactaaattaagataattaagtgcaatatag 30019729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 31745864 - 31745904
Alignment:
Q  6 aaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    ||||| |||||||||||||| ||| ||||||||||||||||    
T  31745864 aaatataaattactaaattaagattattaagtgcaatatag 31745904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 4e-56; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 131 - 265
Target Start/End: Original strand, 51125046 - 51125180
Alignment:
Q  131 aatattattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaagaacaatactaattattttgcctgtgctcaataatt 230  Q
    |||||||||||||||||||  ||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  51125046 aatattattacaaaactaacataatgtgtattatagtactaaaatattgatataataatttaaagtacaatactaattattttgcctgtgctcaataatt 51125145  T
Q  231 tcattgcggattatgtttcgaacgcgattcatctc 265  Q
    |||||||||||||||||||||||||||| ||||||    
T  51125146 tcattgcggattatgtttcgaacgcgatccatctc 51125180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 131 - 265
Target Start/End: Complemental strand, 52692962 - 52692828
Alignment:
Q  131 aatattattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaagaacaatactaattattttgcctgtgctcaataatt 230  Q
    |||||||||||||||||||  ||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  52692962 aatattattacaaaactaacataatgtgtattatagtactaaaatattgatataataatttaaagtacaatactaattattttgcctgtgctcaataatt 52692863  T
Q  231 tcattgcggattatgtttcgaacgcgattcatctc 265  Q
    |||||||||||||||||||||||||||| ||||||    
T  52692862 tcattgcggattatgtttcgaacgcgatccatctc 52692828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 131 - 265
Target Start/End: Complemental strand, 38469603 - 38469469
Alignment:
Q  131 aatattattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaagaacaatactaattattttgcctgtgctcaataatt 230  Q
    |||||||||||||||||||  ||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38469603 aatattattacaaaactaacataatgtgtattatagtactaaaatattgatataataatttaaagtacaatactaattattttgcctgtgctcaataatt 38469504  T
Q  231 tcattgcggattatgtttcgaacgcgattcatctc 265  Q
    |||||||||||||||||| ||||||||| ||||||    
T  38469503 tcattgcggattatgttttgaacgcgatccatctc 38469469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 131 - 233
Target Start/End: Complemental strand, 1527928 - 1527826
Alignment:
Q  131 aatattattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaagaacaatactaattattttgcctgtgctcaataatt 230  Q
    |||||||||||||||||||  ||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1527928 aatattattacaaaactaacataatgtgtattatagtactaaaatattgatataataatttaaagtacaatactaattattttgcctgtgctcaataatt 1527829  T
Q  231 tca 233  Q
    |||    
T  1527828 tca 1527826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 47141026 - 47141080
Alignment:
Q  131 aatattattacaaaactaatttaaagtgaattatagtactaaaatattgatataa 185  Q
    |||||||||||||||||||  ||| ||| ||||||||||||||||||||||||||    
T  47141026 aatattattacaaaactaacataatgtgtattatagtactaaaatattgatataa 47141080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 1528058 - 1528017
Alignment:
Q  5 taaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  1528058 taaatagaaattactaaattaagataattaagtgcaatatag 1528017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 38469733 - 38469692
Alignment:
Q  5 taaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  38469733 taaatagaaattactaaattaagataattaagtgcaatatag 38469692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 47140896 - 47140937
Alignment:
Q  5 taaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  47140896 taaatagaaattactaaattaagataattaagtgcaatatag 47140937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 51124916 - 51124957
Alignment:
Q  5 taaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  51124916 taaatagaaattactaaattaagataattaagtgcaatatag 51124957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 52693092 - 52693051
Alignment:
Q  5 taaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  52693092 taaatagaaattactaaattaagataattaagtgcaatatag 52693051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 131 - 236
Target Start/End: Original strand, 31012272 - 31012377
Alignment:
Q  131 aatattattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaagaacaatactaattattttgcctgtgctcaataatt 230  Q
    |||||||||||||||||||  ||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  31012272 aatattattacaaaactaacataatgtgtattatagtactaaaatattgatataataatttaaagtacaatactaattattttgcctgtgctcaataatt 31012371  T
Q  231 tcattg 236  Q
    ||||||    
T  31012372 tcattg 31012377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 131 - 233
Target Start/End: Original strand, 25341253 - 25341355
Alignment:
Q  131 aatattattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaagaacaatactaattattttgcctgtgctcaataatt 230  Q
    |||||||||||||||||||  ||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25341253 aatattattacaaaactaacataatgtgtattatagtactaaaatattgatataataatttaaagtacaatactaattattttgcctgtgctcaataatt 25341352  T
Q  231 tca 233  Q
    |||    
T  25341353 tca 25341355  T

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Target: chr7; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 131 - 209
Target Start/End: Complemental strand, 41064903 - 41064825
Alignment:
Q  131 aatattattacaaaactaatttaaagtgaattatagtactaaaatattgatataataatttaaagaacaatactaatta 209  Q
    |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| | |||||||||||    
T  41064903 aatattattacaaaactaatttaatgtgtatcatagtactaaaatattgatataataatttaaagtataatactaatta 41064825  T

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Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 111 - 172
Target Start/End: Complemental strand, 12910366 - 12910305
Alignment:
Q  111 ttaaattgcaacaaagtactaatattattacaaaactaatttaaagtgaattatagtactaa 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12910366 ttaaattgcaacaaagtactaatattattacaaaactaatttaaagtgtattatagtactaa 12910305  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 12910473 - 12910431
Alignment:
Q  4 ctaaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  12910473 ctaaatagaaattactaaattaggataattaagtgcaatatag 12910431  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 31012142 - 31012183
Alignment:
Q  5 taaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  31012142 taaatagaaattactaaattaagataattaagtgcaatatag 31012183  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 12910312 - 12910268
Alignment:
Q  125 agtactaatattattacaaaactaatttaaagtgaattatagtac 169  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||    
T  12910312 agtactaatattattacaaaactgatttaaagtgtattatagtac 12910268  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 25341127 - 25341164
Alignment:
Q  9 tagaaattactaaattaggataattaagtgcaatatag 46  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  25341127 tagaaattactaaattaagataattaagtgcaatatag 25341164  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 41065032 - 41064992
Alignment:
Q  6 aaatagaaattactaaattaggataattaagtgcaatatag 46  Q
    |||||||||||||||||||| ||||||||||| ||||||||    
T  41065032 aaatagaaattactaaattaagataattaagtacaatatag 41064992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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