View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_145 (Length: 266)
Name: NF11293A_low_145
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_145 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 5726608 - 5726343
Alignment:
| Q |
8 |
agaatatagtagactggaaaaagcatttctttaatttaattaagatattaacatatgccgacataatgaagcataaaatttagagttaatttttgcaccc |
107 |
Q |
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| T |
5726608 |
agaaaatagtagactgaaaaaagcatttctttaatttaattaagatattaacatatgccgacataatgaagcataaaatttagagttaatttttgcaacc |
5726509 |
T |
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| Q |
108 |
ttaacttcttagtttttccttagcaaacaaataatgt--------------ctcgtagagattccttttgagttaattgatatcattttatgatattgac |
193 |
Q |
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|||||||||||||||||||||||| |||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5726508 |
ttaacttcttagtttttccttagc-aacaaataatgtaacatctacgagcaattgcagagattccttttgagttaattgatatcattttatgatattgac |
5726410 |
T |
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| Q |
194 |
atattcgggtatatatttttcatatgcacaggtttaaattggaactccaaactaaataattagttta |
260 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5726409 |
atattcgggtatatatttttcatatgcacaggtttaaattgaaactccaaactaaataattagttta |
5726343 |
T |
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