View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_148 (Length: 263)
Name: NF11293A_low_148
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_148 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 6 - 233
Target Start/End: Complemental strand, 12649736 - 12649502
Alignment:
| Q |
6 |
agtacctacactacaccccaaacaaaaatgcaatcatgtgtctgttctgtcgtttctttacctcccaagaaaacgaccaatagttgaaggcccaatatgc |
105 |
Q |
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| T |
12649736 |
agtacctacactacaccccaaacaaaaatgcaatcatgtgtctgttctgtcgtttctttacctcctaagaaaatgaccaatagtttaaggcccaatatgc |
12649637 |
T |
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| Q |
106 |
atggttataacttgtcacaacaagagtc-------aagaggctgttcaaatcataataagaacttgagttcaccaatcaagatcaatcgtataggtatac |
198 |
Q |
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| T |
12649636 |
atggttatgacttgtcacaacaagagtcaagactcaagaggctgttcaaatcataataagaacttgagttcaccaattaagatcaatcgtgtaagtatac |
12649537 |
T |
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| Q |
199 |
tgctaaacgtgtctaacaaataggttgtgtaaaat |
233 |
Q |
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|||| ||||||||||||||||||| |||||||||| |
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| T |
12649536 |
tgctgaacgtgtctaacaaatagggtgtgtaaaat |
12649502 |
T |
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