View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11293A_low_159 (Length: 256)
Name: NF11293A_low_159
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_159 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 36314907 - 36315151
Alignment:
| Q |
1 |
tttcgattaacgcccaacttcatcgttgggatcaaaaagtttgtgtgataatcaaaactctgccataatatactctttgtcccatttgggtgaagttgtt |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36314907 |
tttcgattaactcccaacttcatcgttgggatcaaaaagtttgtgggataatcaaaactctgccataatatactctttgtcccatttgggtaaagttgtt |
36315006 |
T |
|
| Q |
101 |
gaagcacaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcattggtttcctatcttgacattctat |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36315007 |
gaagcaaaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcattggtttcctatcttgacattctat |
36315106 |
T |
|
| Q |
201 |
tttgagcacaccagagtaatctagtgataaaactgttgaatcttc |
245 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36315107 |
tttgagaacaccagagtaatctagtgataaaactgttgaatcttc |
36315151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 156; Significance: 6e-83; HSPs: 24)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 19469756 - 19469993
Alignment:
| Q |
1 |
tttcgattaacgcccaacttcatcgttgggatcaaaaagtttgtgtgataatcaaaactctgccataatatactctttgtcccatttgggtgaagttgtt |
100 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||| | || |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19469756 |
tttcgattaactcccaacttcatcattgggatcaatacgtctgtgggataatcgaaactctgccataatatactctttgtcccatttgggtgaagttgtt |
19469855 |
T |
|
| Q |
101 |
gaagcacaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcattgg---tttcctatcttgacattc |
197 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||||| | ||||||||||||| ||||||||| ||||| |||||||| |||| |||| |
|
|
| T |
19469856 |
gaagcacaaagttacccgtgtctaaaatagtggccatagtgttgttggtaggttgaggtgaagagtaaatgattattggtaatttcctattttgagattc |
19469955 |
T |
|
| Q |
198 |
tattttgagcacaccagagtaatctagtgataaaactg |
235 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
19469956 |
tattttgagcacaccagagtagtctagtaataaaactg |
19469993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 19540680 - 19540917
Alignment:
| Q |
1 |
tttcgattaacgcccaacttcatcgttgggatcaaaaagtttgtgtgataatcaaaactctgccataatatactctttgtcccatttgggtgaagttgtt |
100 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||| | || |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19540680 |
tttcgattaactcccaacttcatcattgggatcaatacgtctgtgggataatcgaaactctgccataatatactctttgtcccatttgggtgaagttgtt |
19540779 |
T |
|
| Q |
101 |
gaagcacaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcattgg---tttcctatcttgacattc |
197 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||||| | ||||||||||||| ||||||||| ||||| |||||||| |||| |||| |
|
|
| T |
19540780 |
gaagcacaaagttacccgtgtctaaaatagtggccatagtgttgttggtaggttgaggtgaagagtaaatgattattggtaatttcctattttgagattc |
19540879 |
T |
|
| Q |
198 |
tattttgagcacaccagagtaatctagtgataaaactg |
235 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
19540880 |
tattttgagcacaccagagtagtctagtaataaaactg |
19540917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 19592018 - 19591781
Alignment:
| Q |
1 |
tttcgattaacgcccaacttcatcgttgggatcaaaaagtttgtgtgataatcaaaactctgccataatatactctttgtcccatttgggtgaagttgtt |
100 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||| | || |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19592018 |
tttcgattaactcccaacttcatcattgggatcaatacgtctgtgggataatcgaaactctgccataatatactctttgtcccatttgggtgaagttgtt |
19591919 |
T |
|
| Q |
101 |
gaagcacaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcattgg---tttcctatcttgacattc |
197 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||||| | ||||||||||||| ||||||||| ||||| |||||||| |||| |||| |
|
|
| T |
19591918 |
gaagcacaaagttacccgtgtctaaaatagtggccatagtgttgttggtaggttgaggtgaagagtaaatgattattggtaatttcctattttgagattc |
19591819 |
T |
|
| Q |
198 |
tattttgagcacaccagagtaatctagtgataaaactg |
235 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
19591818 |
tattttgagcacaccagagtagtctagtaataaaactg |
19591781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 19504313 - 19504544
Alignment:
| Q |
1 |
tttcgattaacgcccaacttcatcgttgggatcaaaaagtttgtgtgataatcaaaactctgccataatatactctttgtcccatttgggtgaagttgtt |
100 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19504313 |
tttcgattaactcccaacttcatcgttgagatcaaaatgtatgttggataatcaaaactctgccataatatactctttgtcccatttgggtgaagttgtt |
19504412 |
T |
|
| Q |
101 |
gaagcacaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcattggt---ttcctatcttgacattc |
197 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |||| | |||||||| |||| ||||||||| |||||| ||||||| |||| |||| |
|
|
| T |
19504413 |
gaagcacaaagttaccggtgtctaacatagtggccacagtgtcgttggttggttgaggcgaagagtaaatgattattggtaaattcctattttgaaattc |
19504512 |
T |
|
| Q |
198 |
tattttgagcacaccagagtaatctagtgata |
229 |
Q |
| |
|
||||||||||||||||||||| |||| ||||| |
|
|
| T |
19504513 |
tattttgagcacaccagagtagtctaatgata |
19504544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 19345030 - 19344790
Alignment:
| Q |
1 |
tttcgattaacgcccaacttcatcgttgggatcaaaaagtttgtgtgataatcaaaactctgccataatatactctttgtcccatttgggtgaagttgtt |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| || | |||||||||||||||||||||||| ||| ||||||||||||||||||| ||||| |
|
|
| T |
19345030 |
tttcgattaactcccaacttcatcgttgggatcaaagtgtgatcgggataatcaaaactctgccataataaactatttgtcccatttgggtgaaattgtt |
19344931 |
T |
|
| Q |
101 |
gaagcacaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcattggtttcctatcttgacattctat |
200 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||| ||||||||| ||||||||||||| | ||||||||| ||||||||||||| || ||||||| |
|
|
| T |
19344930 |
gaagcacaaagttacctgtgtctaatatagtggccaaagtgttgtttatgggttgaggtgacgagtaaatgattattggtttcctattttatgattctat |
19344831 |
T |
|
| Q |
201 |
tttgagcacaccagagtaatctagtgataaaactgttgaat |
241 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||| ||||| |
|
|
| T |
19344830 |
tttgagcacaccagaataatctagtgatagaactgctgaat |
19344790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 5 - 241
Target Start/End: Complemental strand, 19448371 - 19448135
Alignment:
| Q |
5 |
gattaacgcccaacttcatcgttgggatcaaaaagtttgtgtgataatcaaaactctgccataatatactctttgtcccatttgggtgaagttgttgaag |
104 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| || || ||||||||||||||||||| || | | |||||| |||||| ||||||| ||||||||| |
|
|
| T |
19448371 |
gattaacgcctaacttcatcgttgggatcaaaacgtctgatggataatcaaaactctgccacaacacagtctttgacccattggggtgaaattgttgaag |
19448272 |
T |
|
| Q |
105 |
cacaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcattggtttcctatcttgacattctattttg |
204 |
Q |
| |
|
|||||||||||| |||||||| |||||||||| ||||||||| ||||||||||||||| ||||||||| ||||||||||||| ||| ||||||||||| |
|
|
| T |
19448271 |
cacaaagttacctgtgtctaatatagtggccaaagtgttgtttatgggttgaggtgaagagtaaatgattattggtttcctattttgtgattctattttg |
19448172 |
T |
|
| Q |
205 |
agcacaccagagtaatctagtgataaaactgttgaat |
241 |
Q |
| |
|
||||||||||| ||||||||||||| ||||| ||||| |
|
|
| T |
19448171 |
agcacaccagaataatctagtgatagaactgctgaat |
19448135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 5 - 241
Target Start/End: Original strand, 19532705 - 19532941
Alignment:
| Q |
5 |
gattaacgcccaacttcatcgttgggatcaaaaagtttgtgtgataatcaaaactctgccataatatactctttgtcccatttgggtgaagttgttgaag |
104 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| || || ||||||||||||||||||| || | | |||||| |||||| ||||||| ||||||||| |
|
|
| T |
19532705 |
gattaacgcctaacttcatcgttgggatcaaaacgtctgatggataatcaaaactctgccacaacacagtctttgacccattggggtgaaattgttgaag |
19532804 |
T |
|
| Q |
105 |
cacaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcattggtttcctatcttgacattctattttg |
204 |
Q |
| |
|
|||||||||||| |||||||| |||||||||| ||||||||| ||||||||||||||| ||||||||| ||||||||||||| ||| ||||||||||| |
|
|
| T |
19532805 |
cacaaagttacctgtgtctaatatagtggccaaagtgttgtttatgggttgaggtgaagagtaaatgattattggtttcctattttgtgattctattttg |
19532904 |
T |
|
| Q |
205 |
agcacaccagagtaatctagtgataaaactgttgaat |
241 |
Q |
| |
|
||||||||||| ||||||||||||| ||||| ||||| |
|
|
| T |
19532905 |
agcacaccagaataatctagtgatagaactgctgaat |
19532941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 19376478 - 19376236
Alignment:
| Q |
1 |
tttcgattaacgcccaacttcatcgttgggatcaaaaagtttgtgtgataatcaaaactctgccataatatactctttgtcccatttgggtgaagttgtt |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| || || ||||||||||||||||||| || | | |||||| |||||| || |||| ||||| |
|
|
| T |
19376478 |
tttcgattaacgcctaacttcatcgttgggatcaaaacgtctgatggataatcaaaactctgccacaaaacagtctttgacccattgggatgaaattgtt |
19376379 |
T |
|
| Q |
101 |
gaagcacaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcattggtttcctatcttgacattctat |
200 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||| ||||||||| | ||||||||||||| ||||||||| ||||||||||||| ||| ||||||| |
|
|
| T |
19376378 |
gaagcacaaagttacctgtgtctaatatagtggccaaagtgttgtttattggttgaggtgaagagtaaatgattattggtttcctattttgtgattctat |
19376279 |
T |
|
| Q |
201 |
tttgagcacaccagagtaatctagtgataaaactgttgaatct |
243 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||| ||||||| |
|
|
| T |
19376278 |
tttgagcacaccagagtagtctagtgatagaactgctgaatct |
19376236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 19390452 - 19390218
Alignment:
| Q |
1 |
tttcgattaacgcccaacttcatcgttgggatcaaaaagtttgtgtgataatcaaaactctgccataatatactctttgtcccatttgggtgaagttgtt |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| || | |||||||||||||||||||||||| ||||||||| ||||||||||||| || || |
|
|
| T |
19390452 |
tttcgattaactcccaacttcatcgttgggatcaaagtgtcgtcgggataatcaaaactctgccataataaactctttgtaccatttgggtgaaattttt |
19390353 |
T |
|
| Q |
101 |
gaagcacaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcattggtttcctatcttgacattctat |
200 |
Q |
| |
|
|||||||||||||||| ||||||| |||||| |||| ||||||||| ||||||||||||||| ||||||||| ||||||||||||| |||| ||||||| |
|
|
| T |
19390352 |
gaagcacaaagttaccggtgtctagcatagttgccatagtgttgtttatgggttgaggtgaagagtaaatgattattggtttcctattttgagattctat |
19390253 |
T |
|
| Q |
201 |
tttgagcacaccagagtaatctagtgataaaactg |
235 |
Q |
| |
|
|||||||||||||| ||| | || ||||||||||| |
|
|
| T |
19390252 |
tttgagcacaccagtgtagtttaatgataaaactg |
19390218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 19410668 - 19410434
Alignment:
| Q |
1 |
tttcgattaacgcccaacttcatcgttgggatcaaaaagtttgtgtgataatcaaaactctgccataatatactctttgtcccatttgggtgaagttgtt |
100 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||| || || ||||||||||||||||||| || | |||| ||| || || || ||| ||||| |
|
|
| T |
19410668 |
tttcgattaacgcctaacttcatcattgggatcaaaacgtctgatggataatcaaaactctgccacaacacactcattgagccgttgggaagaaattgtt |
19410569 |
T |
|
| Q |
101 |
gaagcacaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcattggtttcctatcttgacattctat |
200 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||||| | ||||||||||||| ||||||||| ||||||||||||| |||| ||||||| |
|
|
| T |
19410568 |
gaagcacaaagttaccggcgtctaacatagtggccacagtgttgttggtaggttgaggtgaagagtaaatgattattggtttcctattttgagattctat |
19410469 |
T |
|
| Q |
201 |
tttgagcacaccagagtaatctagtgataaaactg |
235 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||| |
|
|
| T |
19410468 |
tttgagcacaccagagtagtctagtgatagaactg |
19410434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 19457687 - 19457453
Alignment:
| Q |
1 |
tttcgattaacgcccaacttcatcgttgggatcaaaaagtttgtgtgataatcaaaactctgccataatatactctttgtcccatttgggtgaagttgtt |
100 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||| || || ||||||||||||||||||| || | |||| ||| || || || ||| ||||| |
|
|
| T |
19457687 |
tttcgattaacgcctaacttcatcattgggatcaaaacgtctgatggataatcaaaactctgccacaacacactcattgagccgttgggaagaaattgtt |
19457588 |
T |
|
| Q |
101 |
gaagcacaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcattggtttcctatcttgacattctat |
200 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||||| | ||||||||||||| ||||||||| ||||||||||||| |||| ||||||| |
|
|
| T |
19457587 |
gaagcacaaagttaccggcgtctaacatagtggccacagtgttgttggtaggttgaggtgaagagtaaatgattattggtttcctattttgagattctat |
19457488 |
T |
|
| Q |
201 |
tttgagcacaccagagtaatctagtgataaaactg |
235 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||| |
|
|
| T |
19457487 |
tttgagcacaccagagtagtctagtgatagaactg |
19457453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 19523391 - 19523625
Alignment:
| Q |
1 |
tttcgattaacgcccaacttcatcgttgggatcaaaaagtttgtgtgataatcaaaactctgccataatatactctttgtcccatttgggtgaagttgtt |
100 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||| || || ||||||||||||||||||| || | |||| ||| || || || ||| ||||| |
|
|
| T |
19523391 |
tttcgattaacgcctaacttcatcattgggatcaaaacgtctgatggataatcaaaactctgccacaacacactcattgagccgttgggaagaaattgtt |
19523490 |
T |
|
| Q |
101 |
gaagcacaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcattggtttcctatcttgacattctat |
200 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||||| | ||||||||||||| ||||||||| ||||||||||||| |||| ||||||| |
|
|
| T |
19523491 |
gaagcacaaagttaccggcgtctaacatagtggccacagtgttgttggtaggttgaggtgaagagtaaatgattattggtttcctattttgagattctat |
19523590 |
T |
|
| Q |
201 |
tttgagcacaccagagtaatctagtgataaaactg |
235 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||| |
|
|
| T |
19523591 |
tttgagcacaccagagtagtctagtgatagaactg |
19523625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 19355334 - 19355091
Alignment:
| Q |
1 |
tttcgattaacgcccaacttcatcgttgggatcaaaaagtttgtgtgataatcaaaactctgccataatatactctttgtcccatttgggtgaagttgtt |
100 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||| | ||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
19355334 |
tttcgattaacacctaacttcatcgttgggatcaaactatctgttggatagtcaaaactctgccatagtatactctttgtcccatttgggtgaagttgtt |
19355235 |
T |
|
| Q |
101 |
gaagcacaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcattggt---ttcctatcttgacattc |
197 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |||| | |||| ||| || |||||||| || ||| ||||||| |||| |||| |
|
|
| T |
19355234 |
gaagcacaaagttacctgtgtctaacatagtggccacagtgtcgttggttggttcaggcaaataataaatgataatcggtacattcctattttgaaattc |
19355135 |
T |
|
| Q |
198 |
tattttgagcacaccagagtaatctagtgataaaactgttgaat |
241 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||| ||||| |
|
|
| T |
19355134 |
tattttgagcacaccagagtagtctagtgatagaactgctgaat |
19355091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 4 - 243
Target Start/End: Complemental strand, 19337311 - 19337069
Alignment:
| Q |
4 |
cgattaacgcccaacttcatcgttgggatcaaaaagtttgtgtgataatcaaaactctgccataatatactctttgtcccatttgggtgaagttgttgaa |
103 |
Q |
| |
|
|||||||| || |||||||||||||| | |||| || | | || |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
19337311 |
cgattaacacctaacttcatcgttggtaacaaagtgtctacgggagaatcaaaactctgccataatatactctttgtcccatttgggtgaagctgttgaa |
19337212 |
T |
|
| Q |
104 |
gcacaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcattggt---ttcctatcttgacattctat |
200 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||| |||| | |||||||| ||| |||||||| |||||| ||||||| |||| ||||||| |
|
|
| T |
19337211 |
gcacgaagttaccggtgtctaacatagtggccacagtgtcgttggttggttgaggcgaataataaatgataattggtacattcctattttgaaattctat |
19337112 |
T |
|
| Q |
201 |
tttgagcacaccagagtaatctagtgataaaactgttgaatct |
243 |
Q |
| |
|
|||||| ||||||||||| |||||||||| ||||| ||||||| |
|
|
| T |
19337111 |
tttgagtacaccagagtagtctagtgatagaactgctgaatct |
19337069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 19287575 - 19287338
Alignment:
| Q |
1 |
tttcgattaacgcccaacttcatcgttgggatcaaaaagtttgtgtgataatcaaaactctgccataatatactctttgtcccatttgggtgaagttgtt |
100 |
Q |
| |
|
||||| ||||| || |||||||| |||||||||||| | |||| |||||||||||||||||||||||||| ||||||||||||||||||||| || || |
|
|
| T |
19287575 |
tttcggttaacacctaacttcattgttgggatcaaagtggctgtgggataatcaaaactctgccataatatattctttgtcccatttgggtgaatttttt |
19287476 |
T |
|
| Q |
101 |
gaagcacaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcattgg---tttcctatcttgacattc |
197 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||| || ||| | || ||||| |||| ||||||||| || || |||||||| |||| |||| |
|
|
| T |
19287475 |
gaagcacaaagttaccggtgtctaacatagtggcgacagtattattggtcggatgaggcgaagagtaaatgataatcggtaatttcctattttgagattc |
19287376 |
T |
|
| Q |
198 |
tattttgagcacaccagagtaatctagtgataaaactg |
235 |
Q |
| |
|
||||||||||||||||||||| |||| ||||| ||||| |
|
|
| T |
19287375 |
tattttgagcacaccagagtagtctaatgatagaactg |
19287338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 19173071 - 19173308
Alignment:
| Q |
1 |
tttcgattaacgcccaacttcatcgttgggatcaaaaagtttgtgtgataatcaaaactctgccataatatactctttgtcccatttgggtgaagttgtt |
100 |
Q |
| |
|
||||| ||||| || ||||||||||||||||||||| | || || ||||||||||||||||||||||||||||||||||||| || |||| || |||| |
|
|
| T |
19173071 |
tttcggttaacacctaacttcatcgttgggatcaaagtggttatgggataatcaaaactctgccataatatactctttgtcccgttggggtaaatttgtc |
19173170 |
T |
|
| Q |
101 |
gaagcacaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcattggtttcctatcttgacattctat |
200 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||| || |||| ||||||||||||||| | | ||||| ||||||||||||| ||| ||| ||| |
|
|
| T |
19173171 |
gaagcacaaagttacctgtgtctaatatagtggccaaag---tgtttatgggttgaggtgaagagcatatgattattggtttcctattttgtgattgtat |
19173267 |
T |
|
| Q |
201 |
tttgagcacaccagagtaatctagtgataaaactgttgaat |
241 |
Q |
| |
|
||||||||||||||| ||||||||||| | ||||| ||||| |
|
|
| T |
19173268 |
tttgagcacaccagaataatctagtgaaagaactgctgaat |
19173308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 19404609 - 19404367
Alignment:
| Q |
1 |
tttcgattaacgcccaacttcatcgttgggatcaaaaagtttgtgtgataatcaaaactctgccataatatactctttgtcccatttgggtgaagttgtt |
100 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||| || || | ||||||||||||||||| || | | |||||| |||||| ||||||| |||| |
|
|
| T |
19404609 |
tttcgattaactcctaacttcatcgttgggatcaaaacgtctgatgggtaatcaaaactctgccacaacacagtctttgacccattggggtgaaattgtc |
19404510 |
T |
|
| Q |
101 |
gaagcacaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcattggtttcctatcttgacattctat |
200 |
Q |
| |
|
|||||||||||||||| |||||||| ||||| |||| ||||||||| ||||||||||||||| |||||||| |||||||||||| ||| ||||||| |
|
|
| T |
19404509 |
gaagcacaaagttacctgtgtctaatatagtagccaaagtgttgtttatgggttgaggtgaagaataaatgataattggtttcctactttgtgattctat |
19404410 |
T |
|
| Q |
201 |
tttgagcacaccagagtaatctagtgataaaactgttgaatct |
243 |
Q |
| |
|
|||||||||||| ||||| ||||| |||| ||||| ||||||| |
|
|
| T |
19404409 |
tttgagcacaccggagtagtctagcgatagaactgctgaatct |
19404367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 4 - 241
Target Start/End: Original strand, 19468823 - 19469060
Alignment:
| Q |
4 |
cgattaacgcccaacttcatcgttgggatcaaaaagtttgtgtgataatcaaaactctgccataatatactctttgtcccatttgggtgaagttgttgaa |
103 |
Q |
| |
|
||||||||||| |||||||||||||| | |||| || | ||||||||||||||||||| || | |||| ||| ||||| || |||| |||| ||| |
|
|
| T |
19468823 |
cgattaacgcctaacttcatcgttggaaccaaagtgtcatcgggataatcaaaactctgccacaacacactcattgagccattgggatgaaattgtcgaa |
19468922 |
T |
|
| Q |
104 |
gcacaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcattggtttcctatcttgacattctatttt |
203 |
Q |
| |
|
||||||||||||| |||||||| |||||||||| ||||||||| ||||||||||||||| ||||||||| ||||||||||||| ||| |||||||||| |
|
|
| T |
19468923 |
gcacaaagttacctgtgtctaatatagtggccatagtgttgtttatgggttgaggtgaagagtaaatgattattggtttcctattttgtgattctatttt |
19469022 |
T |
|
| Q |
204 |
gagcacaccagagtaatctagtgataaaactgttgaat |
241 |
Q |
| |
|
||||||||||||||| |||| ||||| ||||| ||||| |
|
|
| T |
19469023 |
gagcacaccagagtagtctaatgatagaactgctgaat |
19469060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #19
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 4 - 241
Target Start/End: Original strand, 19555744 - 19555981
Alignment:
| Q |
4 |
cgattaacgcccaacttcatcgttgggatcaaaaagtttgtgtgataatcaaaactctgccataatatactctttgtcccatttgggtgaagttgttgaa |
103 |
Q |
| |
|
||||||||||| |||||||||||||| | |||| || | ||||||||||||||||||| || | |||| ||| ||||| || |||| |||| ||| |
|
|
| T |
19555744 |
cgattaacgcctaacttcatcgttggaaccaaagtgtcatcgggataatcaaaactctgccacaacacactcattgagccattgggatgaaattgtcgaa |
19555843 |
T |
|
| Q |
104 |
gcacaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcattggtttcctatcttgacattctatttt |
203 |
Q |
| |
|
||||||||||||| |||||||| |||||||||| ||||||||| ||||||||||||||| ||||||||| ||||||||||||| ||| |||||||||| |
|
|
| T |
19555844 |
gcacaaagttacctgtgtctaatatagtggccatagtgttgtttatgggttgaggtgaagagtaaatgattattggtttcctattttgtgattctatttt |
19555943 |
T |
|
| Q |
204 |
gagcacaccagagtaatctagtgataaaactgttgaat |
241 |
Q |
| |
|
||||||||||||||| |||| ||||| ||||| ||||| |
|
|
| T |
19555944 |
gagcacaccagagtagtctaatgatagaactgctgaat |
19555981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #20
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 77 - 235
Target Start/End: Complemental strand, 19489886 - 19489728
Alignment:
| Q |
77 |
ttgtcccatttgggtgaagttgttgaagcacaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcat |
176 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||| ||||||||| ||||||||| ||| ||||||||| || |
|
|
| T |
19489886 |
ttgtcccatttgggtgaagttgttgaatcaccaagttaccggtgtctaacatagtggccaccgtgttgttggtgggttgagttgacaagtaaatgattat |
19489787 |
T |
|
| Q |
177 |
tggtttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactg |
235 |
Q |
| |
|
||||||||||| ||| |||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
19489786 |
tggtttcctattttgtgattctattttgagcgcaccagagtaggctagtgataaaactg |
19489728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #21
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 149 - 241
Target Start/End: Original strand, 19468140 - 19468231
Alignment:
| Q |
149 |
tgggttgaggtgaagtgtaaatgatcattggtttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactgttgaat |
241 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||| || ||| ||||||||||||||||||||||||| |||| ||||| ||||| ||||| |
|
|
| T |
19468140 |
tgggttgaggtgaagagtaaatgattattggtttcc-attttgtgattctattttgagcacaccagagtagtctaatgatagaactgctgaat |
19468231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 19185115 - 19185068
Alignment:
| Q |
194 |
attctattttgagcacaccagagtaatctagtgataaaactgttgaat |
241 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||| ||||| |
|
|
| T |
19185115 |
attctattttgagcacaccagagtagtctagtgatagaactgctgaat |
19185068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 229
Target Start/End: Complemental strand, 16004341 - 16004306
Alignment:
| Q |
194 |
attctattttgagcacaccagagtaatctagtgata |
229 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |
|
|
| T |
16004341 |
attctattttgagcacaccagagtagtctagtgata |
16004306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 19458256 - 19458303
Alignment:
| Q |
194 |
attctattttgagcacaccagagtaatctagtgataaaactgttgaat |
241 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||| ||||| ||||| |
|
|
| T |
19458256 |
attctattttgagcacaccagagtagtctaatgatagaactgctgaat |
19458303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 125
Target Start/End: Complemental strand, 19542877 - 19542803
Alignment:
| Q |
51 |
atcaaaactctgccataatatactctttgtcccatttgggtgaagttgttgaagcacaaagttacccgtgtctaa |
125 |
Q |
| |
|
|||||||||||||||||| | ||| ||| ||||| ||||||| ||||||||| ||||||||||| |||||||| |
|
|
| T |
19542877 |
atcaaaactctgccataaaacacttgttgaaccattggggtgaaattgttgaagaacaaagttaccggtgtctaa |
19542803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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