View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11293A_low_166 (Length: 253)
Name: NF11293A_low_166
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_166 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 6894498 - 6894674
Alignment:
| Q |
17 |
gacatcagtagagaattcgaagtatatggaaaatgactaatttttaaatatttgttatcatgtcatagtcataattaataaatttccgtaaataagtcat |
116 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6894498 |
gacaacagtagagaattcgaagtataaggaaaatgactaatttttaaatatttgttatcatgtcatagtcataattaataaatttccgtaaataagtcat |
6894597 |
T |
|
| Q |
117 |
aattaataatccaacttgatccacgggcacaacacttttcaatcctcttcttgagacgacattaattgaagaattat |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6894598 |
aattaataatccaacttgatccacgggcacaacacttttcaatcctcttcttgagacgacattaattgaagaattat |
6894674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 6894701 - 6894757
Alignment:
| Q |
197 |
gttaagtttgtttgagttcacattaattattttgttatcacactctattgtgcaatg |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6894701 |
gttaagtttgtttgagttcacattaattattttgttatcacactctattgtgcaatg |
6894757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University