View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_17 (Length: 439)
Name: NF11293A_low_17
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 423; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 7 - 433
Target Start/End: Original strand, 33102087 - 33102513
Alignment:
| Q |
7 |
atgccatgaactataggttcatcgcagctgatacacttcaaaaaatcatcatgctccttgcacttacaatttggactaatttcacagctaatggtagctt |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102087 |
atgccatgaactataggttcatcgcagctgatacacttcaaaaaatcatcatgctccttgcacttacaatttggactaatttcacagctaatggtagctt |
33102186 |
T |
|
| Q |
107 |
agagtggatgatcacaatcttctctctttcaacattacccaacactttggttatgggaattccacttctcatagctatgtatggtgaatattccggtacc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102187 |
agagtggatgatcacaatcttctctctttcaacattacccaacactttggttatgggaattccacttctcatagctatgtatggtgaatattccggtacc |
33102286 |
T |
|
| Q |
207 |
cttatggttcaagttgtggttcttcagtgtatcatttggtacactttgttattgtttctttttgagtatcgtggtgctaagcttctaattatggaacagt |
306 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102287 |
cttatggttcaagttgtggttcttcagtgtatcatttggtacactttgttattgtttctttttgagtatcgtggtgctaagcttctaattatggaacagt |
33102386 |
T |
|
| Q |
307 |
ttcctgaaactgctgcttctattatttcctttaaggttgattctgatgttgtttctcttgatgggagagattttcttgagacagatgctgaggttggtga |
406 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102387 |
ttcctgaaactgctgcttctattatttcctttaaggttgattctgatgttgtttctcttgatgggagagattttcttgagacagatgctgaggttggtga |
33102486 |
T |
|
| Q |
407 |
tgatggtaagcttcatgttcatatcag |
433 |
Q |
| |
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|||||||||||||||||||||| |||| |
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|
| T |
33102487 |
tgatggtaagcttcatgttcatgtcag |
33102513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 156 - 365
Target Start/End: Original strand, 52716522 - 52716731
Alignment:
| Q |
156 |
gttatgggaattccacttctcatagctatgtatggtgaatattccggtacccttatggttcaagttgtggttcttcagtgtatcatttggtacactttgt |
255 |
Q |
| |
|
||||||||||| || ||| | | ||||||||||||||| | || || | |||||||| ||| |||| |||||||| || | |||||||||||| | |
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| T |
52716522 |
gttatgggaatccctcttttaagagctatgtatggtgatttctcaggaaatcttatggtacaaattgttgttcttcaaagtgttatttggtacactctta |
52716621 |
T |
|
| Q |
256 |
tattgtttctttttgagtatcgtggtgctaagcttctaattatggaacagtttcctgaaactgctgcttctattatttcctttaaggttgattctgatgt |
355 |
Q |
| |
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| |||||| | ||||| ||| | | |||||| ||||| || | |||||||||||||||||||| |||||||| | || || || ||||||||||| || |
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| T |
52716622 |
tgttgtttttgtttgaatatagagctgctaaacttcttataacagaacagtttcctgaaactgcagcttctataacatcattcaaagttgattctgacgt |
52716721 |
T |
|
| Q |
356 |
tgtttctctt |
365 |
Q |
| |
|
|||||||||| |
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|
| T |
52716722 |
tgtttctctt |
52716731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 361
Target Start/End: Original strand, 52711358 - 52711419
Alignment:
| Q |
300 |
gaacagtttcctgaaactgctgcttctattatttcctttaaggttgattctgatgttgtttc |
361 |
Q |
| |
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||||||||||| |||||||| |||||||| | || || || |||||||||||||||||||| |
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| T |
52711358 |
gaacagtttccagaaactgcagcttctataacatcattcaaagttgattctgatgttgtttc |
52711419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 12 - 425
Target Start/End: Complemental strand, 10838990 - 10838577
Alignment:
| Q |
12 |
atgaactataggttcatcgcagctgatacacttcaaaaaatcatcatgctccttgcacttacaatttggactaatttcacagctaatggtagcttagagt |
111 |
Q |
| |
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||||||| |||||||| || || || ||||||||||||||||||||||| | |||||| || | ||||| ||||| ||||| | ||||| | |
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| T |
10838990 |
atgaacttcaggttcatagctgcagacacacttcaaaaaatcatcatgctagtagcactttcattatggacattgttcactaaaaatggcaatttagaat |
10838891 |
T |
|
| Q |
112 |
ggatgatcacaatcttctctctttcaacattacccaacactttggttatgggaattccacttctcatagctatgtatggtgaatattccggtacccttat |
211 |
Q |
| |
|
||||||| |||||||| || | |||||| | || ||||||||||||||||||||||| | | || |||||||||||||| ||||| |||| | | || |
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|
| T |
10838890 |
ggatgataacaatcttttcattatcaacacttcctaacactttggttatgggaattcctttgttaattgctatgtatggtgattattcaggtagcttaat |
10838791 |
T |
|
| Q |
212 |
ggttcaagttgtggttcttcagtgtatcatttggtacactttgttattgtttctttttgagtatcgtggtgctaagcttctaattatggaacagtttcct |
311 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| | || | |||||||||||||| ||||||||||||||| |||| ||||| |||||||| |
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| T |
10838790 |
ggttcaagttgtggttcttcagtgtattatttggtacactcttttgctttttctttttgagtaccgtggtgctaagcttttaatcatggagcagtttcca |
10838691 |
T |
|
| Q |
312 |
gaaactgctgcttctattatttcctttaaggttgattctgatgttgtttctcttgatgggagagattttcttgagacagatgctgaggttggtgatgatg |
411 |
Q |
| |
|
||||| || ||||| || ||||||||||||| ||||| || ||| | || | ||||| |||||||||||||| || ||||| ||||||||||||| |
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| T |
10838690 |
gaaaccgcggcttccatcgtttcctttaaggtcgattcggacgttatgtcgttagatggaagagattttcttgaaactgatgcatcagttggtgatgatg |
10838591 |
T |
|
| Q |
412 |
gtaagcttcatgtt |
425 |
Q |
| |
|
| ||| | |||||| |
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| T |
10838590 |
ggaagttacatgtt |
10838577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 183 - 424
Target Start/End: Original strand, 34971055 - 34971296
Alignment:
| Q |
183 |
atgtatggtgaatattccggtacccttatggttcaagttgtggttcttcagtgtatcatttggtacactttgttattgtttctttttgagtatcgtggtg |
282 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||| | || |||||||| |||||||||||||| || ||| | |||||| | ||||||||| | |||| |
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| T |
34971055 |
atgtatggtgatgattctggtacccttatggttcaaatagttgttcttcaatgtatcatttggtatacattgatgttgtttttgtttgagtataggggtg |
34971154 |
T |
|
| Q |
283 |
ctaagcttctaattatggaacagtttcctgaaactgctgcttctattatttcctttaaggttgattctgatgttgtttctcttgatgggagagattttct |
382 |
Q |
| |
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||| | |||| ||| | |||||||||||||| ||||||| ||||||||| || || || ||||||||||||||| ||||| | ||||| | ||| || |
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| T |
34971155 |
ctaggattctcattgttgaacagtttcctgatactgctggttctattatatcattcaaagttgattctgatgttctttctttggatggtaaagagccact |
34971254 |
T |
|
| Q |
383 |
tgagacagatgctgaggttggtgatgatggtaagcttcatgt |
424 |
Q |
| |
|
| | || || ||||| |||||||| |||||||| |||||||| |
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|
| T |
34971255 |
tcaaactgaagctgaagttggtgaagatggtaaacttcatgt |
34971296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 147 - 254
Target Start/End: Original strand, 25038852 - 25038959
Alignment:
| Q |
147 |
aacactttggttatgggaattccacttctcatagctatgtatggtgaatattccggtacccttatggttcaagttgtggttcttcagtgtatcatttggt |
246 |
Q |
| |
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||||||||||||||||||||||| | || | || ||||||||||||| ||| |||| | ||||| ||| |||| |||||||| ||||||||||||| |
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| T |
25038852 |
aacactttggttatgggaattcctttacttaaaggaatgtatggtgaattttcaggtagtttaatggtacaaattgttgttcttcaatgtatcatttggt |
25038951 |
T |
|
| Q |
247 |
acactttg |
254 |
Q |
| |
|
| |||||| |
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|
| T |
25038952 |
atactttg |
25038959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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