View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_170 (Length: 251)
Name: NF11293A_low_170
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_170 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 6 - 246
Target Start/End: Original strand, 1831604 - 1831845
Alignment:
| Q |
6 |
catagatagaaaaatttcaaaagacaaatgatgagagaatttgagatggaagatttgggaaagttaaaatatttccttgggatggaattcactaaaactt |
105 |
Q |
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| T |
1831604 |
catagacagaaaaatt-caaaagacaaatgatgacagaatttgagatgactgatttgggaaagttaacatatttccctggaatggaattcactaaaactt |
1831702 |
T |
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| Q |
106 |
cataatgtttagtggtgcaccagatgaaatatgctacaaatattttaaagagattcaacatgatgggcttcaatcctgcatctacaccatctgaagtga- |
204 |
Q |
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| T |
1831703 |
cagaatgtttagtgatgcaccagaagaaatatgctacaaatattttaaagagattcaacatgatgggcttcaatcctgcatctacaccatctgaagtgaa |
1831802 |
T |
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| Q |
205 |
-cctaggtgtgtaaagaatgaagataaggagctagttgaccct |
246 |
Q |
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| || | |||||||||||||||| | ||||||||||||||| |
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| T |
1831803 |
tcttaagcttgtaaagaatgaagatgaagagctagttgaccct |
1831845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 15490592 - 15490418
Alignment:
| Q |
21 |
ttcaaaagacaaatgatgagagaatttgagatggaagatttgggaaagttaaaatatttccttgggatggaattcactaaaacttcataatgtttagtgg |
120 |
Q |
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|||| |||||||||||||||||||||||| |||| |||||||||||||||| ||| ||||||| |||||||||| | |||||| | || |||||| | |
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| T |
15490592 |
ttcataagacaaatgatgagagaatttgatatggctgatttgggaaagttaatatacttccttgaaatggaattcaattaaactttaaaaggtttaggga |
15490493 |
T |
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| Q |
121 |
tgcaccagatg--aaatatgctacaaatattttaaagagattcaacatgatgggcttcaatcctgcatctacacc |
193 |
Q |
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| T |
15490492 |
tgcatcagaagataaacatgttattgatattcttaagagattcaacatgatgagttgcaatcctacatatacacc |
15490418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 135
Target Start/End: Complemental strand, 16944223 - 16944109
Alignment:
| Q |
21 |
ttcaaaagacaaatgatgagagaatttgagatggaagatttgggaaagttaaaatatttccttgggatggaattcactaaaacttcataatgtttagtgg |
120 |
Q |
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||||||||||||||||||| |||||| || ||| |||||||||||||| ||| |||||||| || ||||||||| |||| ||| | | |||||| |
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| T |
16944223 |
ttcaaaagacaaatgatgaaagaattggacatgacttatttgggaaagttaccatacttccttggaatagaattcactgaaacctcaaagggattagtga |
16944124 |
T |
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| Q |
121 |
tgcaccagatgaaat |
135 |
Q |
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||||||||| ||||| |
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| T |
16944123 |
tgcaccagaagaaat |
16944109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 135
Target Start/End: Complemental strand, 17014888 - 17014774
Alignment:
| Q |
21 |
ttcaaaagacaaatgatgagagaatttgagatggaagatttgggaaagttaaaatatttccttgggatggaattcactaaaacttcataatgtttagtgg |
120 |
Q |
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||||||||||||||||||| |||||| || ||| |||||||||||||| ||| |||||||| || ||||||||| |||| ||| | | |||||| |
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| T |
17014888 |
ttcaaaagacaaatgatgaaagaattggacatgacttatttgggaaagttaccatacttccttggaatagaattcactgaaacctcaaagggattagtga |
17014789 |
T |
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| Q |
121 |
tgcaccagatgaaat |
135 |
Q |
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||||||||| ||||| |
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| T |
17014788 |
tgcaccagaagaaat |
17014774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 163
Target Start/End: Original strand, 9816931 - 9817073
Alignment:
| Q |
21 |
ttcaaaagacaaatgatgagagaatttgagatggaagatttgggaaagttaaaatatttccttgggatggaattcactaaaacttcataatgtttagtgg |
120 |
Q |
| |
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||||||||||||||||||| ||| ||||| ||| | |||||||| ||||| ||||||| |||| || |||||||||||||| ||| | | |||||| |
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| T |
9816931 |
ttcaaaagacaaatgatgaaagagtttgacatgactggtttgggaaggttaacatatttctttggaatagaattcactaaaacctcaaagggattagtga |
9817030 |
T |
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| Q |
121 |
tgcaccagatgaaatatgctacaaatattttaaagagattcaa |
163 |
Q |
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| T |
9817031 |
tgcactagaagaaatatgcaatagatattttgaagagattcaa |
9817073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 192
Target Start/End: Original strand, 30065210 - 30065339
Alignment:
| Q |
63 |
ggaaagttaaaatatttccttgggatggaattcactaaaacttcataatgtttagtggtgcaccagatgaaatatgctacaaatattttaaagagattca |
162 |
Q |
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|||||||||| ||| |||||||| |||||||||||||||||||| || || |||| ||| |||| ||| |||||| | ||||| | ||||| |||| |
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| T |
30065210 |
ggaaagttaacatacttccttggtatggaattcactaaaacttctgaaggtctagttaagcatcagaagaagtatgcttctgatattctcaagaggttca |
30065309 |
T |
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| Q |
163 |
acatgatgggcttcaatcctgcatctacac |
192 |
Q |
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| T |
30065310 |
acatgttgaactgcaatcctgcatctacac |
30065339 |
T |
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