View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_171 (Length: 251)
Name: NF11293A_low_171
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_171 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 33791189 - 33790973
Alignment:
| Q |
13 |
agatggacatcattagcagttgatactaatccatcacgtcttcctgtaggaacattgtaacttggtccacctgctaagacaattgaatctcttgttgcta |
112 |
Q |
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| T |
33791189 |
agatgtacatcattaacagttgatactaatccatcacgtcttcctgtaggaacattgtaacttggtccacctgctaagacaacagaatctcttgttgcta |
33791090 |
T |
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| Q |
113 |
atgatattatgtctgcacatgaaactgttgatggacatgcattttctaggattcttttgatttcatctatgaggttatatcctcttacagtaaggtttgc |
212 |
Q |
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| T |
33791089 |
atgatattatgtctgcacatgaaactgttgatggacatgcattttctaggattcttttgatttcatctatgaggttatatcctcttacagtaaggtttgc |
33790990 |
T |
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| Q |
213 |
tcttgctgctttctctg |
229 |
Q |
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| T |
33790989 |
tcttgctgctttctctg |
33790973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 153
Target Start/End: Original strand, 33764098 - 33764212
Alignment:
| Q |
39 |
taatccatcacgtcttcctgtaggaacattgtaacttggtccacctgctaagacaattgaatctcttgttgctaatgatattatgtctgcacatgaaact |
138 |
Q |
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|||||| ||||||||||||||||||| |||||| ||||||| || | |||| | | | ||||||||| || | || || ||||||||||||||||| |
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| T |
33764098 |
taatccgtcacgtcttcctgtaggaatattgtattttggtcctccagataaggccacagcatctcttgtagcaagtgctacgatgtctgcacatgaaacc |
33764197 |
T |
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| Q |
139 |
gttgatggacatgca |
153 |
Q |
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| T |
33764198 |
gttgatggacatgca |
33764212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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