View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_173 (Length: 250)
Name: NF11293A_low_173
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_173 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 7290264 - 7290024
Alignment:
| Q |
10 |
aagaatataaggaatataatcattgattactgatactcttaaagaaacactacaatccttaatatccaatatatccacaatgtgaatattaataaaagga |
109 |
Q |
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| T |
7290264 |
aagaatacaaggaatataatcattgattactgatactcttaaagaaacactacaatccttaatatccaatatatccacaatgtgaatattaataaaagga |
7290165 |
T |
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| Q |
110 |
gaaaaataactgatagctgctagaaaatccattgctttaatattcaaatagagaattttaagttgttgtttgtattaaactacaaacatataagattcat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||| ||||||| |
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| T |
7290164 |
gaaaaataactgatagctgctagaaaatccattgctttaatactcaaatagagaattttaagttgttgtttgtattaaactaccaccatataggattcat |
7290065 |
T |
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| Q |
210 |
aatataagaaatataaaagtacacatcagataactaacatg |
250 |
Q |
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| T |
7290064 |
aatataagaaatataaaagtacacatcagataactaacatg |
7290024 |
T |
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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 85 - 158
Target Start/End: Complemental strand, 34452469 - 34452393
Alignment:
| Q |
85 |
cacaatgtgaatattaataaaa-ggagaaaaataactgatagctgctagaaaatcc--attgctttaatattcaaat |
158 |
Q |
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||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
34452469 |
cacaatgtgaatattaaaaaaaaggagagaaataactgatagctgctagaaaatccatattgctttaatactcaaat |
34452393 |
T |
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