View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_18 (Length: 435)
Name: NF11293A_low_18
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 3 - 429
Target Start/End: Complemental strand, 7440892 - 7440462
Alignment:
| Q |
3 |
agagcggttatagttttgtttttattattgtgatgaattagagtttcggtgttacaaacaatatataaagtattactgctatgattcagttaacaatatt |
102 |
Q |
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| T |
7440892 |
agagcggttatagttttgtttttattattgtgatgaattagagtttcggtgttacaaacaatatatataatattactactatgattcagttaacaatatt |
7440793 |
T |
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| Q |
103 |
acctctgatgagccataatacaaccggcccttgccttctttaatgttttgcatatattaggtatactttaacaacttagaaatcaaaattaaagataatt |
202 |
Q |
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| T |
7440792 |
acctctgatgagccatactactaccgccccttgccttatttaatgtcttgcatatattaggtaaactttaacaacttagaaatcaaaattaaagataatt |
7440693 |
T |
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| Q |
203 |
tataacgcttgatttcctcaattcactctagcc----atttaacaaagaagaaaattgtgatgacttataaaggagtcaaagcaatcaatacctaaacat |
298 |
Q |
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| T |
7440692 |
tataacacttgatttcctcaattcactctagccattaatttaacaaagaagaaaattgtgatgacttataaaggagtcaaagcaatcaatacctaaacat |
7440593 |
T |
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| Q |
299 |
gttttaaatcaaacttgatatcaaaacattggtgctagaaggaggattgagggcaaatgaaccttctaacacctaaatatctttgattgtggggtacgat |
398 |
Q |
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| T |
7440592 |
gttttaaatcaaacttgatatcaaaacattggtgctagaaggaggattgagggcaaatgaaccttttagcacctaaatatctttgattgtggggtacgat |
7440493 |
T |
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| Q |
399 |
tccattacaaaagaaagtctaacagtcttag |
429 |
Q |
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| T |
7440492 |
tccattacaaaagaaagtataacagtcttag |
7440462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 6397763 - 6397845
Alignment:
| Q |
11 |
tatagttttgtttttattattgtgatgaattagagtttcggtgttacaaacaatatataaagtattactgctatgattcagtt |
93 |
Q |
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| T |
6397763 |
tatagttttgtttctattactgtgatgaactaaggtttcagtgttacaagcaatatatatagtattattactatgattcagtt |
6397845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 42517168 - 42517120
Alignment:
| Q |
31 |
tgtgatgaattagagtttcggtgttacaaacaatatataaagtattact |
79 |
Q |
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| T |
42517168 |
tgtgatgaattagggtttcggtgttacaaacaatatatatagtactact |
42517120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 41941137 - 41941063
Alignment:
| Q |
31 |
tgtgatgaattagagtttcggtgttacaaacaatatataaagtattactgctatgattcagttaacaatattacc |
105 |
Q |
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| T |
41941137 |
tgtgatgaattagggtttcaatgttacaagtaatatatatactactactactacgattcagtttacaatattacc |
41941063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 100
Target Start/End: Complemental strand, 4490392 - 4490295
Alignment:
| Q |
3 |
agagcggttatagttttgtttttattattgtgatgaattagagtttcggtgttacaaacaatatataaagtattactgctatgattcagttaacaata |
100 |
Q |
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| T |
4490392 |
agagcagttatagtcttgtttgtattattatgatgaattaaggtttcagtgttgcatgcaatatatatagtaatacaattatgattcagtttacaata |
4490295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 24447236 - 24447163
Alignment:
| Q |
20 |
gtttttattattgtgatgaattagagtttcggtgttacaaacaatatataaagtattactgctatgattcagtt |
93 |
Q |
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| T |
24447236 |
gtttgtattactgtgatgaatttgagtttcagtattacaagcaatacatataatactactgctacgattcagtt |
24447163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 36010267 - 36010202
Alignment:
| Q |
38 |
aattagagtttcggtgttacaaacaatatataaagtattactgctatgattcagttaacaatatta |
103 |
Q |
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| T |
36010267 |
aattaaagtttcaatgttacaaacaatatatataatactacttctacgattcagttcacaatatta |
36010202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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