View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_183 (Length: 249)
Name: NF11293A_low_183
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_183 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 8 - 249
Target Start/End: Original strand, 4406420 - 4406659
Alignment:
| Q |
8 |
cgaagaatatacataacatgaaatttattgctttattgatcctccatttgtttcccaaccagaagagaatcattaacctgcattggttgcatagtaacca |
107 |
Q |
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| T |
4406420 |
cgaacaatatacataacatgaaatttattgctttattgatcctccatttgtttcccatccagaacagaatcattaacttgcattggttgcatagtaacca |
4406519 |
T |
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| Q |
108 |
cttcaacatgaataataggaatctctttctcataatttaagacatttcccaaagacacacaagttgtaatatctttaaaccttattatatcatcaataag |
207 |
Q |
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| T |
4406520 |
cttcaacatgaataataggaatctcttcctcataatttaagacatttcccaaag--acacaagttgtaatatctttaaaccttattatatcatcaataag |
4406617 |
T |
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| Q |
208 |
atggtatgtttctacaacagttttactgcaacctccaacaaa |
249 |
Q |
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| T |
4406618 |
atggtatatttctacaacagttttactgcaacctccaacaaa |
4406659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 247
Target Start/End: Original strand, 39279922 - 39280039
Alignment:
| Q |
130 |
ctctttctcataatttaagacatttcccaaagacacacaagttgtaatatctttaaaccttattatatcatcaataagatggtatgtttctacaacagtt |
229 |
Q |
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| T |
39279922 |
ctcttcctcatggtttaaaacatatcccacaaactcacaagttgtaacttccttagaccatattatatcatcaataagagggtctttttctacaacagtt |
39280021 |
T |
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| Q |
230 |
ttactgcaacctccaaca |
247 |
Q |
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| T |
39280022 |
ttactacaacctgcaaca |
39280039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 248
Target Start/End: Complemental strand, 39358277 - 39358172
Alignment:
| Q |
143 |
tttaagacatttcccaaagacacacaagttgtaatatctttaaaccttattatatcatcaataagatggtatgtttctacaacagttttactgcaacctc |
242 |
Q |
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| T |
39358277 |
tttaaaacatttcccacaaactcacaatttgtaactgctttagaccttattatatcatcaataagagggtctatttctacaacagttttgctgctacctg |
39358178 |
T |
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| Q |
243 |
caacaa |
248 |
Q |
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|||||| |
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| T |
39358177 |
caacaa |
39358172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 239
Target Start/End: Complemental strand, 34032913 - 34032793
Alignment:
| Q |
118 |
aataataggaatctctttctcataatttaagacatttcccaaagacacacaagttgtaatatctttaaaccttattatatcatcaataagatggtatgtt |
217 |
Q |
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|||| ||| |||||||| ||||| |||||||||| | ||| | |||||||||||| || || |||||||||| |||||||||||||||| || | || |
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| T |
34032913 |
aatattagaaatctcttcctcatggtttaagacatcttccacaaacacacaagttgctatttccttaaaccttagtatatcatcaataaga-ggactatt |
34032815 |
T |
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| Q |
218 |
tctacaacagttttactgcaac |
239 |
Q |
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| T |
34032814 |
tctacaacagttttactgcaac |
34032793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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