View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11293A_low_188 (Length: 248)

Name: NF11293A_low_188
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11293A_low_188
NF11293A_low_188
[»] chr7 (10 HSPs)
chr7 (17-247)||(1595498-1595728)
chr7 (17-247)||(1541958-1542188)
chr7 (42-150)||(1105427-1105535)
chr7 (38-247)||(1557902-1558105)
chr7 (38-151)||(1603846-1603962)
chr7 (29-123)||(3956074-3956168)
chr7 (190-247)||(1604001-1604058)
chr7 (42-91)||(1551375-1551424)
chr7 (38-139)||(2329174-2329275)
chr7 (38-139)||(2337073-2337174)
[»] chr8 (6 HSPs)
chr8 (42-247)||(18749654-18749853)
chr8 (42-247)||(18724002-18724201)
chr8 (38-150)||(18739865-18739977)
chr8 (38-150)||(18744829-18744941)
chr8 (194-247)||(18739729-18739782)
chr8 (194-247)||(18744693-18744746)
[»] scaffold0491 (3 HSPs)
scaffold0491 (42-247)||(6495-6694)
scaffold0491 (38-150)||(1744-1856)
scaffold0491 (194-247)||(1608-1661)


Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 1595498 - 1595728
Alignment:
Q  17 atattgtctacatttacagatttaatttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1595498 atattgtctacatttacagatttaatttaagcaataataatctcactggcacaattccccaatctctctgtaatgtctattatgtggacatttcatacaa 1595597  T
Q  117 ttgtttggagggtccccttccaagttgtcttcagcttaacacaacaacaagggaaaattatgatggatgttcgtttaaccaattcccaccttggtcacca 216  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||| | ||||||  ||||||||||||    
T  1595598 ttgtttggagggtccctttccaagttgtcttcagcttaacacaacaacaagggaaaattctgatgtatgttcatttagcaaattccagccttggtcacca 1595697  T
Q  217 cacaagaaaaataataaattaaagcacattg 247  Q
    |||||||||||||||||||||||||||||||    
T  1595698 cacaagaaaaataataaattaaagcacattg 1595728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 1542188 - 1541958
Alignment:
Q  17 atattgtctacatttacagatttaatttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaa 116  Q
    |||||| |||||||||||   |||||||||||||||||||||||||||| ||||||||||||||||||||| ||| | ||||||||||||||||||||||    
T  1542188 atattgactacatttacaaccttaatttaagcaataataatctcactggaacaattccccaatctctctgtgatgtcaattatgtggacatttcatacaa 1542089  T
Q  117 ttgtttggagggtccccttccaagttgtcttcagcttaacacaacaacaagggaaaattatgatggatgttcgtttaaccaattcccaccttggtcacca 216  Q
    |||||||||||||||| |||||| ||||| |   ||| | |||||||  || ||||| ||||||| |||| | |||||||||||||  ||||||||||||    
T  1542088 ttgtttggagggtcccattccaaattgtcctggtctttatacaacaaacagcgaaaactatgatgtatgtccatttaaccaattccagccttggtcacca 1541989  T
Q  217 cacaagaaaaataataaattaaagcacattg 247  Q
    |||||||||||||||||||||||||||||||    
T  1541988 cacaagaaaaataataaattaaagcacattg 1541958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 42 - 150
Target Start/End: Original strand, 1105427 - 1105535
Alignment:
Q  42 tttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaattgtttggagggtccccttccaagt 141  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||| |    
T  1105427 tttaagcaataataatctcactggaacaattccccaatctctctgtaatgtcgattatgtggacatttcatacaattgtttggagggtcccattccaaat 1105526  T
Q  142 tgtcttcag 150  Q
    |||||||||    
T  1105527 tgtcttcag 1105535  T

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Target: chr7; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 38 - 247
Target Start/End: Complemental strand, 1558105 - 1557902
Alignment:
Q  38 ttaatttaagcaataataatctcactggcacaattccccaatctctctgtaatgcct------attatgtggacatttcatacaattgtttggagggtcc 131  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||   |      |||||||||||||||||||||||||||||||||||||    
T  1558105 ttaatttaagcaataataatctcactggaacaattccccaatctctctgtaatttattcaattattatgtggacatttcatacaattgtttggagggtcc 1558006  T
Q  132 ccttccaagttgtcttcagcttaacacaacaacaagggaaaattatgatggatgttcgtttaaccaattcccaccttggtcaccacacaagaaaaataat 231  Q
    | |||||| ||||||| | | ||             |||||||| ||||| |||||| |||||| ||||||  |||||||||||||||||||||||||||    
T  1558005 cattccaaattgtcttgatcatat------------ggaaaattctgatgtatgttcatttaacaaattccagccttggtcaccacacaagaaaaataat 1557918  T
Q  232 aaattaaagcacattg 247  Q
    ||||||||||||||||    
T  1557917 aaattaaagcacattg 1557902  T

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Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 38 - 151
Target Start/End: Original strand, 1603846 - 1603962
Alignment:
Q  38 ttaatttaagcaataataatctcactggcacaattccccaatctctctgtaatgcc---tattatgtggacatttcatacaattgtttggagggtcccct 134  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||  |   |||||||||||||||||||||||||||||||||| |||| |    
T  1603846 ttaatttaagcaataataatctctctggaacaattccccaatctctctgtaatttctattattatgtggacatttcatacaattgtttggaggatcccat 1603945  T
Q  135 tccaagttgtcttcagc 151  Q
    ||||| |||||||||||    
T  1603946 tccaaattgtcttcagc 1603962  T

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Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 3956168 - 3956074
Alignment:
Q  29 tttacagatttaatttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaattgtttg 123  Q
    |||||| | |||||||||| ||||||||||||| ||| || || |||||||||||||||||||  | |||| |||||||||| ||||||||||||    
T  3956168 tttacaaacttaatttaagtaataataatctcagtggaacgataccccaatctctctgtaatgttttttatctggacatttcttacaattgtttg 3956074  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 1604001 - 1604058
Alignment:
Q  190 tttaaccaattcccaccttggtcaccacacaagaaaaataataaattaaagcacattg 247  Q
    |||||||||||||  |||||| ||  ||||||||||||||| ||||||||||||||||    
T  1604001 tttaaccaattccatccttggccaatacacaagaaaaataaaaaattaaagcacattg 1604058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 1551424 - 1551375
Alignment:
Q  42 tttaagcaataataatctcactggcacaattccccaatctctctgtaatg 91  Q
    ||||||| |||||||||||||||| ||||||||||| ||| | |||||||    
T  1551424 tttaagccataataatctcactggaacaattccccattctatttgtaatg 1551375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 139
Target Start/End: Original strand, 2329174 - 2329275
Alignment:
Q  38 ttaatttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaattgtttggagggtccccttcc 137  Q
    |||||||||| ||||||||||| || ||     ||||||||||||| ||||||| | |||||||||||||||| | ||||  |||  ||||||| |||||    
T  2329174 ttaatttaaggaataataatcttacaggagtgtttccccaatctctttgtaatgtcaattatgtggacatttccttcaatcatttaaagggtcctcttcc 2329273  T
Q  138 aa 139  Q
    ||    
T  2329274 aa 2329275  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 139
Target Start/End: Original strand, 2337073 - 2337174
Alignment:
Q  38 ttaatttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaattgtttggagggtccccttcc 137  Q
    |||||||||| ||||||||||| || ||     ||||||||||||| ||||||| | |||||||||||||||| | ||||  |||  ||||||| |||||    
T  2337073 ttaatttaaggaataataatcttacaggagtgtttccccaatctctttgtaatgtcaattatgtggacatttccttcaatcatttaaagggtcctcttcc 2337172  T
Q  138 aa 139  Q
    ||    
T  2337173 aa 2337174  T

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Target: chr8 (Bit Score: 107; Significance: 9e-54; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 42 - 247
Target Start/End: Complemental strand, 18749853 - 18749654
Alignment:
Q  42 tttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaattgtttggagggtccccttccaagt 141  Q
    |||||| ||||||||||||||||| |||||||||||||||||||| |||| |  |||||||||||||||||||||||||||| |||||||| |||||| |    
T  18749853 tttaagaaataataatctcactggaacaattccccaatctctctgcaatgtcatttatgtggacatttcatacaattgtttgaagggtcccattccaatt 18749754  T
Q  142 tgtcttcagcttaacacaacaacaagggaaaattatgatggatgttcgtttaaccaattcccaccttggtcaccacacaagaaaaataataaattaaagc 241  Q
    |||||||||      ||||| |  | |||||||| ||||  |||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  18749753 tgtcttcag------acaacgaagatggaaaattctgatatatgttcatttaaccagttccaaccttggtcaccacacaagaaaaataataaattaaagc 18749660  T

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Target: chr8; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 42 - 247
Target Start/End: Complemental strand, 18724201 - 18724002
Alignment:
Q  42 tttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaattgtttggagggtccccttccaagt 141  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||| | |  |||||||||||||||||||||||||||| |||||||| |||||| |    
T  18724201 tttaagaaataataatctcactggaacaattccccaatctctctgtaaagtcatttatgtggacatttcatacaattgtttgaagggtcccattccaaat 18724102  T
Q  142 tgtcttcagcttaacacaacaacaagggaaaattatgatggatgttcgtttaaccaattcccaccttggtcaccacacaagaaaaataataaattaaagc 241  Q
    |||||||      | ||||| |  |  ||||||| ||||| |||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  18724101 tgtcttc------atacaacgaagatcgaaaattctgatgtatgttcatttaaccagttccaaccttggtcaccacacaagaaaaataataaattaaagc 18724008  T

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Target: chr8; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 38 - 150
Target Start/End: Complemental strand, 18739977 - 18739865
Alignment:
Q  38 ttaatttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaattgtttggagggtccccttcc 137  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  18739977 ttaatttaagcaataataatctcactggaacaattccccaatctctctgtaatgtctattatgtggacatttcatacaattgtttggagggtcccattcc 18739878  T
Q  138 aagttgtcttcag 150  Q
    || ||||||||||    
T  18739877 aaattgtcttcag 18739865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 38 - 150
Target Start/End: Complemental strand, 18744941 - 18744829
Alignment:
Q  38 ttaatttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaattgtttggagggtccccttcc 137  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  18744941 ttaatttaagcaataataatctcactggaacaattccccaatctctctgtaatgtctattatgtggacatttcatacaattgtttggagggtcccattcc 18744842  T
Q  138 aagttgtcttcag 150  Q
    || ||||||||||    
T  18744841 aaattgtcttcag 18744829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 18739782 - 18739729
Alignment:
Q  194 accaattcccaccttggtcaccacacaagaaaaataataaattaaagcacattg 247  Q
    |||||||||  |||||| || |||||||||||||||| ||||||||||||||||    
T  18739782 accaattccatccttggccaacacacaagaaaaataaaaaattaaagcacattg 18739729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 18744746 - 18744693
Alignment:
Q  194 accaattcccaccttggtcaccacacaagaaaaataataaattaaagcacattg 247  Q
    |||||||||  |||||| || |||||||||||||||| ||||||||||||||||    
T  18744746 accaattccatccttggccaacacacaagaaaaataaaaaattaaagcacattg 18744693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 103; Significance: 2e-51; HSPs: 3)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 42 - 247
Target Start/End: Complemental strand, 6694 - 6495
Alignment:
Q  42 tttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaattgtttggagggtccccttccaagt 141  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||| | |  |||||||||||||||||||||||||||| |||||||| |||||| |    
T  6694 tttaagaaataataatctcactggaacaattccccaatctctctgtaaagtcatttatgtggacatttcatacaattgtttgaagggtcccattccaaat 6595  T
Q  142 tgtcttcagcttaacacaacaacaagggaaaattatgatggatgttcgtttaaccaattcccaccttggtcaccacacaagaaaaataataaattaaagc 241  Q
    |||||||      | ||||| |  |  ||||||| ||||| |||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  6594 tgtcttc------atacaacgaagatcgaaaattctgatgtatgttcatttaaccagttccaaccttggtcaccacacaagaaaaataataaattaaagc 6501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 38 - 150
Target Start/End: Complemental strand, 1856 - 1744
Alignment:
Q  38 ttaatttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaattgtttggagggtccccttcc 137  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  1856 ttaatttaagcaataataatctcactggaacaattccccaatctctctgtaatgtctattatgtggacatttcatacaattgtttggagggtcccattcc 1757  T
Q  138 aagttgtcttcag 150  Q
    || ||||||||||    
T  1756 aaattgtcttcag 1744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 1661 - 1608
Alignment:
Q  194 accaattcccaccttggtcaccacacaagaaaaataataaattaaagcacattg 247  Q
    |||||||||  |||||| || |||||||||||||||| ||||||||||||||||    
T  1661 accaattccatccttggccaacacacaagaaaaataaaaaattaaagcacattg 1608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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