View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_197 (Length: 244)
Name: NF11293A_low_197
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_197 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 21 - 244
Target Start/End: Original strand, 37231987 - 37232210
Alignment:
| Q |
21 |
catagtatagtgaagtgctttttcttgtttgtaacaatccattccacgtgcctatttcaacttatatgttatttcgttaagtaagcgatctttaattaca |
120 |
Q |
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| T |
37231987 |
catagtatagtgaagagctttttcttgtttgtaacaatccattccacgtgcctatttcaacttatatgttatttcattaagtaagcgatctttaattaca |
37232086 |
T |
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| Q |
121 |
cagaaagttgcaatcaagaagatgaagatgcaagcaacaagagaatttctttctgaactgaaagtcttaacaagtgtttatcacttaaacctggtaaatt |
220 |
Q |
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| T |
37232087 |
cagaaagttgcaatcaagaagatgaagacgcaagcaacaagagaatttctttctgaactgaaagtcttaacaagtgttcgtcacttaaacctggtaaatt |
37232186 |
T |
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| Q |
221 |
ttcaaacatataacatttttcttt |
244 |
Q |
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| T |
37232187 |
ttcaaacatataacatttttcttt |
37232210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 39 - 231
Target Start/End: Original strand, 37217074 - 37217266
Alignment:
| Q |
39 |
tttttcttgtttgtaacaatccattccacgtgcctatttcaacttatatgttatttcgttaagtaagcgatctttaattacacagaaagttgcaatcaag |
138 |
Q |
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| T |
37217074 |
tttttcttgttggtatcaatccattccatgtgcctgtttcaaattttatgtttttttgttaagtaaggtgtctttaattacacagaaaattgcaatcaag |
37217173 |
T |
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| Q |
139 |
aagatgaagatgcaagcaacaagagaatttctttctgaactgaaagtcttaacaagtgtttatcacttaaacctggtaaattttcaaacatat |
231 |
Q |
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| T |
37217174 |
aagatgaagatgcaagcaacaagagaatttctctctgaactgaaagttttaacaagtgttcatcactggaacctggtaaattttcaatcatat |
37217266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 39 - 218
Target Start/End: Original strand, 37223074 - 37223253
Alignment:
| Q |
39 |
tttttcttgtttgtaacaatccattccacgtgcctatttcaacttatatgttatttcgttaagtaagcgatctttaattacacagaaagttgcaatcaag |
138 |
Q |
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| T |
37223074 |
tttttcttgttgctaacaataaattccatgtgcctatttcaaattttatgttcgtttgttaagtaagctgtctttaattacacagaaaattgcaatcaag |
37223173 |
T |
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| Q |
139 |
aagatgaagatgcaagcaacaagagaatttctttctgaactgaaagtcttaacaagtgtttatcacttaaacctggtaaa |
218 |
Q |
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| T |
37223174 |
aagatgaagatgcaagcaacaagagaatttctttctgaactgaaagtgttaacaagtgttcatcaccggaacctggtaaa |
37223253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 109 - 227
Target Start/End: Complemental strand, 37385829 - 37385711
Alignment:
| Q |
109 |
tctttaattacacagaaagttgcaatcaagaagatgaagatgcaagcaacaagagaatttctttctgaactgaaagtcttaacaagtgtttatcacttaa |
208 |
Q |
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| T |
37385829 |
tcttcaattacacagaaaactgcaataaaaaagatgaagatgcaagcaacaagggaatttcttgctgaactgaaaatcttaacaagagttcaccactgca |
37385730 |
T |
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| Q |
209 |
acctggtaaattttcaaac |
227 |
Q |
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| T |
37385729 |
acctggtaaattttcaaac |
37385711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 217
Target Start/End: Original strand, 37197992 - 37198096
Alignment:
| Q |
113 |
taattacacagaaagttgcaatcaagaagatgaagatgcaagcaacaagagaatttctttctgaactgaaagtcttaacaagtgtttatcacttaaacct |
212 |
Q |
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| T |
37197992 |
taattacacagaaagctgcaataaaaaagatggacatgaaagcaacaaaagaatttcttgctgagttgaaggtgttgacgcgtgttcatcacgtgaacct |
37198091 |
T |
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| Q |
213 |
ggtaa |
217 |
Q |
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| T |
37198092 |
ggtaa |
37198096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 203
Target Start/End: Original strand, 36197385 - 36197467
Alignment:
| Q |
121 |
cagaaagttgcaatcaagaagatgaagatgcaagcaacaagagaatttctttctgaactgaaagtcttaacaagtgtttatca |
203 |
Q |
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| T |
36197385 |
cagaaagctgcaatcaagaagatggatatgcaagcaacgaaggaatttctcgctgaattgaaagtcctgacacgtgttcatca |
36197467 |
T |
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