View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_2 (Length: 688)
Name: NF11293A_low_2
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 618; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 25 - 686
Target Start/End: Complemental strand, 45566153 - 45565492
Alignment:
| Q |
25 |
taggagaaaagtcaggatggagggattttgctcaggctgaagaattgtacagaggatatgaacgaaccgggaagaaagctccaaagtaagtatcaagttt |
124 |
Q |
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| T |
45566153 |
taggagaaaagtcaggatggagggattttgctcaggctgaagaattgtacagaggatatgaacgaacggggaagaaagctccaaagtaagtatcgagttt |
45566054 |
T |
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| Q |
125 |
ccattgatgaatgtcgggatgagttagatagatttaggggcagcgtgcaagcttcccaaattgggcgctctaaggaggtacatatttgaatgggaggatt |
224 |
Q |
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| T |
45566053 |
ccattgatgaatgtcgggatgagttagagagatttaggggcagcgtgcaagcttcccaaattgcgcgctctaaggaggtacatatttgaatgagaggatt |
45565954 |
T |
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| Q |
225 |
attggcacaagcagaagcattttggaaacaaatagcaaaggtgatttggcttaaggatggtgacaccaatgcgcgattctttcaagccatggcgagtgca |
324 |
Q |
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| T |
45565953 |
attggcacaagcagaagcattttggaaacaaatagcaaaggtgatttggcttaaggatggtgataccaatgcgcgattctttcaagccatggcgagtgca |
45565854 |
T |
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| Q |
325 |
aagagatgatgcaatacttttacaaacttgaagaaagatgataggactttggttgtggcgcaacatgaactttacgtggttgctagctcctattttatga |
424 |
Q |
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| T |
45565853 |
aagagatgatgcaatacttttacaaacttgaagaaagatgataggactttggttgtggcgcaacatgaactttacgtggttgctagctcctattttatga |
45565754 |
T |
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| Q |
425 |
attctgcgtgcaaagagatgatgttgggcgaatggatgagaatgtggggtttgcgaattctctaacagatcaaagtttttctttgaagtgtgcttggagg |
524 |
Q |
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| T |
45565753 |
attctgcgtgcaaagagatgatgttcggtgaatggatgagaatgtggggtttgcgaattctgtaacagatcaaagtttttctttgaagtgtgcttggagg |
45565654 |
T |
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| Q |
525 |
tattcttcctactcttatgagacttcaagagagaggagttctatgttcaaatggatgtccccattgtgaaacaaactatgagaacgattggatgtaaagc |
624 |
Q |
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| T |
45565653 |
tattcttcctactcttatgagacttcaaaagagaggagttccatgttcaaatggatgtccccattgtgaaacaaactatgagaacgattggatgtaaagc |
45565554 |
T |
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| Q |
625 |
ggcaaaacaaatatggtgcgaggctgatctgtgggattcagttagcagaggcgcaggtgctg |
686 |
Q |
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| T |
45565553 |
ggcaaaacaaatatggtgcgaggctgatctgtgggattcagttagcagaggcgcaggtgctg |
45565492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 226 - 287
Target Start/End: Complemental strand, 8179449 - 8179388
Alignment:
| Q |
226 |
ttggcacaagcagaagcattttggaaacaaatagcaaaggtgatttggcttaaggatggtga |
287 |
Q |
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| T |
8179449 |
ttggcacaagaagaagcgttttggaagcaaagagctaaggtgatttggctgaaggatggtga |
8179388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 583 - 615
Target Start/End: Original strand, 45286940 - 45286972
Alignment:
| Q |
583 |
ccccattgtgaaacaaactatgagaacgattgg |
615 |
Q |
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| T |
45286940 |
ccccattgtgaaacaaactacgagaacgattgg |
45286972 |
T |
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