View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_20 (Length: 425)
Name: NF11293A_low_20
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 153 - 406
Target Start/End: Original strand, 31738863 - 31739116
Alignment:
| Q |
153 |
tttccatttccagatgttttgttaagaagaaaaaataagatttctattggttgaacttcagtacaggcacttgatcactatcaatgcactctgtcttaga |
252 |
Q |
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| T |
31738863 |
tttccatttcgagaagttttgttaagaagaaaaaacaagatttctattggttgaacttcagtacaggcacttgatcactatcaatgcactctatcttaga |
31738962 |
T |
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| Q |
253 |
atttatgtttgatctaattaaaattttataactttggattgtaaggtgagggtcatcccacttataaatatatttttaaattatatttcatttatgtgtg |
352 |
Q |
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| T |
31738963 |
atttaagtttgatctaattaaaattttataactttgaattgtaaggtgagggccatcccacttataaatatatttttaaattatatttcatttatgtgtg |
31739062 |
T |
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| Q |
353 |
tgattgttaataaacatcttcgtattcgtgataagatattcagttcgagtgatt |
406 |
Q |
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| T |
31739063 |
tgacggttaataaacatctttgtattcgtgataagatattcatttcgagtgatt |
31739116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 31738717 - 31738822
Alignment:
| Q |
7 |
ggtcggtgcacgagtaatcactcccattcagctagctagagtgaccccattacccacatttcgtggtgctcgttgtgttcactcttcttccataaggttg |
106 |
Q |
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| T |
31738717 |
ggtcggtgcacgagtaatcactcccattcagctagctagagtgaccccattacccacatttcgtggtgctcgttgtgttcactcttcttccataaggttg |
31738816 |
T |
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| Q |
107 |
tacata |
112 |
Q |
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|||||| |
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| T |
31738817 |
tacata |
31738822 |
T |
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