View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11293A_low_21 (Length: 424)

Name: NF11293A_low_21
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11293A_low_21
NF11293A_low_21
[»] chr4 (10 HSPs)
chr4 (1-274)||(50968204-50968477)
chr4 (39-117)||(6067669-6067747)
chr4 (43-116)||(34505290-34505363)
chr4 (39-117)||(31553694-31553772)
chr4 (306-363)||(50968491-50968548)
chr4 (42-116)||(4690134-4690208)
chr4 (43-117)||(33871041-33871115)
chr4 (43-116)||(52818059-52818132)
chr4 (43-117)||(6071145-6071218)
chr4 (379-418)||(50968549-50968588)
[»] chr8 (7 HSPs)
chr8 (39-120)||(40866295-40866376)
chr8 (39-117)||(7895149-7895227)
chr8 (40-116)||(44415934-44416010)
chr8 (39-121)||(42014301-42014383)
chr8 (43-117)||(24864608-24864682)
chr8 (43-117)||(38085946-38086020)
chr8 (42-115)||(9963285-9963358)
[»] chr6 (7 HSPs)
chr6 (39-117)||(3992803-3992881)
chr6 (39-117)||(7432416-7432494)
chr6 (39-117)||(7441933-7442011)
chr6 (39-117)||(7425621-7425699)
chr6 (42-115)||(7432982-7433055)
chr6 (39-117)||(7418530-7418608)
chr6 (39-117)||(7414581-7414659)
[»] chr3 (9 HSPs)
chr3 (43-117)||(29618312-29618386)
chr3 (43-121)||(41552096-41552174)
chr3 (43-117)||(11580203-11580277)
chr3 (43-115)||(1488013-1488085)
chr3 (43-115)||(2031252-2031324)
chr3 (43-115)||(35679472-35679544)
chr3 (43-117)||(35687869-35687943)
chr3 (43-117)||(52638656-52638730)
chr3 (70-117)||(35692217-35692264)
[»] chr2 (11 HSPs)
chr2 (42-121)||(3197563-3197642)
chr2 (39-124)||(34643000-34643085)
chr2 (43-123)||(39082462-39082542)
chr2 (43-118)||(24359790-24359865)
chr2 (43-117)||(4713110-4713184)
chr2 (39-117)||(8884447-8884525)
chr2 (42-117)||(36772397-36772472)
chr2 (42-117)||(36793511-36793586)
chr2 (42-117)||(37559326-37559401)
chr2 (43-117)||(42968150-42968224)
chr2 (43-117)||(36756170-36756244)
[»] chr7 (6 HSPs)
chr7 (42-119)||(37022194-37022271)
chr7 (37-117)||(30034301-30034381)
chr7 (39-119)||(46075148-46075228)
chr7 (43-121)||(25287956-25288034)
chr7 (39-115)||(46972135-46972211)
chr7 (43-121)||(34984430-34984508)
[»] chr1 (10 HSPs)
chr1 (41-122)||(23058051-23058132)
chr1 (39-118)||(30340907-30340986)
chr1 (43-119)||(37369512-37369588)
chr1 (41-115)||(23057679-23057753)
chr1 (41-115)||(23057864-23057938)
chr1 (41-115)||(23061980-23062054)
chr1 (39-121)||(30320741-30320823)
chr1 (57-110)||(23057568-23057621)
chr1 (57-110)||(23061869-23061922)
chr1 (42-115)||(43065996-43066074)
[»] chr5 (1 HSPs)
chr5 (42-117)||(2626071-2626146)


Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 50968204 - 50968477
Alignment:
Q  1 aatatgtaataagcgaaaaaaggaatatttgaaattataaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccat 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50968204 aatatgtaataagcgaaaaaaggaatatttgaaattaaaaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccat 50968303  T
Q  101 ttgagctacatccccatgttgaaattacattctcttgatcaataaaatattatgttatagaaaaaccggatagcatggttgcacgtagccgttcgttttg 200  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  50968304 ttgagctacatccccatgttgaaattacatcctcttgatcattaaaatattatgttatagaaaaaccggatagcatggttgcacatagccgttcgttttg 50968403  T
Q  201 cttcggaaataaacaccatactgggattgataaatgttttgtagagtcctctgacattggtaagaatcctagat 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50968404 cttcggaaataaacaccatactgggattgataaatgttttgtagagtcctctgacattggtaagaatcctagat 50968477  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 39 - 117
Target Start/End: Complemental strand, 6067747 - 6067669
Alignment:
Q  39 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 117  Q
    ||||||||||||| ||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6067747 aaaatggagatgcagggtatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 6067669  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 43 - 116
Target Start/End: Complemental strand, 34505363 - 34505290
Alignment:
Q  43 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccca 116  Q
    ||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  34505363 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatcccca 34505290  T

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Target: chr4; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 39 - 117
Target Start/End: Complemental strand, 31553772 - 31553694
Alignment:
Q  39 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 117  Q
    ||||||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  31553772 aaaatggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 31553694  T

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Target: chr4; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 306 - 363
Target Start/End: Original strand, 50968491 - 50968548
Alignment:
Q  306 ctgccaaacaggtattggcttcataatcacttttcatttttctcttgaagccttcaat 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50968491 ctgccaaacaggtattggcttcataatcacttttcatttttctcttgaagccttcaat 50968548  T

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Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 42 - 116
Target Start/End: Original strand, 4690134 - 4690208
Alignment:
Q  42 atggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccca 116  Q
    |||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| |||||||||||||||    
T  4690134 atggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatcccca 4690208  T

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Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 33871041 - 33871115
Alignment:
Q  43 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 117  Q
    ||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  33871041 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 33871115  T

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Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 43 - 116
Target Start/End: Complemental strand, 52818132 - 52818059
Alignment:
Q  43 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccca 116  Q
    ||||||||| ||| ||||||||| || |||| ||||||||||||| ||||||||||||||||||||||||||||    
T  52818132 tggagatgcagggtatcgaaccctgtacctcccgcatgcaaagcgggcgctctaccatttgagctacatcccca 52818059  T

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Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 6071218 - 6071145
Alignment:
Q  43 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 117  Q
    ||||||||||||| ||| ||||| |  ||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  6071218 tggagatgcgggg-atcaaaccctgaacctcttgcatgcaaagcaagcgctctaccatttgagctacatccccat 6071145  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 418
Target Start/End: Original strand, 50968549 - 50968588
Alignment:
Q  379 agttgtagcaaaaaattgtttgataaccttacgacttatt 418  Q
    |||||||||||||||||||| ||||||||||| |||||||    
T  50968549 agttgtagcaaaaaattgttcgataaccttaccacttatt 50968588  T

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Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 40866295 - 40866376
Alignment:
Q  39 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgtt 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40866295 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgtt 40866376  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 39 - 117
Target Start/End: Original strand, 7895149 - 7895227
Alignment:
Q  39 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 117  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7895149 aaaatggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccat 7895227  T

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Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 44416010 - 44415934
Alignment:
Q  40 aaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccca 116  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  44416010 aaatggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatcccca 44415934  T

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Target: chr8; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 39 - 121
Target Start/End: Complemental strand, 42014383 - 42014301
Alignment:
Q  39 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgttg 121  Q
    ||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||| ||||    
T  42014383 aaaatggaggtgcggggaatcgaaccccgtgcctctcgcatgcgaagcgagcgctctaccatatgagctacacccccaagttg 42014301  T

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Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 24864682 - 24864608
Alignment:
Q  43 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 117  Q
    ||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  24864682 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 24864608  T

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Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 38086020 - 38085946
Alignment:
Q  43 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 117  Q
    ||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  38086020 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 38085946  T

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Target: chr8; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 42 - 115
Target Start/End: Original strand, 9963285 - 9963358
Alignment:
Q  42 atggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 115  Q
    |||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||    
T  9963285 atggaggtgcggggaatcgaaccccgtgcctctcgcatgcgaagcgagcgctctaccatatgagctacaccccc 9963358  T

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Target: chr6 (Bit Score: 79; Significance: 9e-37; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 39 - 117
Target Start/End: Original strand, 3992803 - 3992881
Alignment:
Q  39 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3992803 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 3992881  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 39 - 117
Target Start/End: Original strand, 7432416 - 7432494
Alignment:
Q  39 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 117  Q
    ||||||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  7432416 aaaatggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 7432494  T

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Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 39 - 117
Target Start/End: Original strand, 7441933 - 7442011
Alignment:
Q  39 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 117  Q
    ||||||||| ||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  7441933 aaaatggagttgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 7442011  T

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Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 39 - 117
Target Start/End: Original strand, 7425621 - 7425699
Alignment:
Q  39 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 117  Q
    ||||||||||||||||| ||| | |||||| |||||| ||||| |||||||||||||||||| ||||||||||||||||    
T  7425621 aaaatggagatgcggggtatcaatccccgtacctctcacatgctaagcgagcgctctaccatctgagctacatccccat 7425699  T

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Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 42 - 115
Target Start/End: Original strand, 7432982 - 7433055
Alignment:
Q  42 atggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 115  Q
    |||||||||||||| ||||| |||||| ||||| |||||| |||||||||||||||||| ||||||||||||||    
T  7432982 atggagatgcggggtatcgatccccgtacctcttgcatgctaagcgagcgctctaccatctgagctacatcccc 7433055  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 39 - 117
Target Start/End: Original strand, 7418530 - 7418608
Alignment:
Q  39 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 117  Q
    |||||||||||| |||| ||| | |||||| |||||| ||||| |||||||| || |||||| ||||||||||||||||    
T  7418530 aaaatggagatgtggggtatcaatccccgtccctctcacatgctaagcgagcactataccatctgagctacatccccat 7418608  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 117
Target Start/End: Original strand, 7414581 - 7414659
Alignment:
Q  39 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 117  Q
    ||||||||| |||  || ||||| |||| | |||||| ||||| |||||||||||||||||| | ||||||||||||||    
T  7414581 aaaatggagttgcaaggtatcgatccccatacctctcacatgctaagcgagcgctctaccatctaagctacatccccat 7414659  T

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Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 29618386 - 29618312
Alignment:
Q  43 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29618386 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 29618312  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 43 - 121
Target Start/End: Complemental strand, 41552174 - 41552096
Alignment:
Q  43 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgttg 121  Q
    ||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||    
T  41552174 tggagctgcggggaatcgaaccccgtgcctctcgcatgcgaagcgagcgctctaccatatgagctacaaccccatgttg 41552096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 11580277 - 11580203
Alignment:
Q  43 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 117  Q
    ||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  11580277 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 11580203  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 1488085 - 1488013
Alignment:
Q  43 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 115  Q
    ||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||    
T  1488085 tggaggtgcggggaatcgaaccccgtgcctctcgcatgcgaagcgagcgctctaccatatgagctacaccccc 1488013  T

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Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 2031324 - 2031252
Alignment:
Q  43 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 115  Q
    ||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||    
T  2031324 tggaggtgcggggaatcgaaccccgtgcctctcgcatgcgaagcgagcgctctaccatatgagctacaccccc 2031252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 35679544 - 35679472
Alignment:
Q  43 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 115  Q
    ||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||    
T  35679544 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatcccc 35679472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 35687943 - 35687869
Alignment:
Q  43 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 117  Q
    ||||||||||||| ||||| |||| | |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  35687943 tggagatgcggggtatcgatccccatacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 35687869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 52638656 - 52638730
Alignment:
Q  43 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 117  Q
    |||||||||  || ||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  52638656 tggagatgcatggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatttgagctacatccccat 52638730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 117
Target Start/End: Complemental strand, 35692264 - 35692217
Alignment:
Q  70 cctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 117  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  35692264 cctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 35692217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 42 - 121
Target Start/End: Complemental strand, 3197642 - 3197563
Alignment:
Q  42 atggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgttg 121  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3197642 atggagatgcgggggatcaaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccaggttg 3197563  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 39 - 124
Target Start/End: Original strand, 34643000 - 34643085
Alignment:
Q  39 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgttgaaa 124  Q
    ||||||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  34643000 aaaatggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccatgttgaaa 34643085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 39082542 - 39082462
Alignment:
Q  43 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgttgaa 123  Q
    ||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39082542 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgatgaa 39082462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 43 - 118
Target Start/End: Complemental strand, 24359865 - 24359790
Alignment:
Q  43 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatg 118  Q
    ||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24359865 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatg 24359790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 4713110 - 4713184
Alignment:
Q  43 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 117  Q
    ||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4713110 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 4713184  T

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Target: chr2; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 39 - 117
Target Start/End: Complemental strand, 8884525 - 8884447
Alignment:
Q  39 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 117  Q
    ||||||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  8884525 aaaatggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 8884447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 42 - 117
Target Start/End: Original strand, 36772397 - 36772472
Alignment:
Q  42 atggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 117  Q
    |||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  36772397 atggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 36772472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 42 - 117
Target Start/End: Original strand, 36793511 - 36793586
Alignment:
Q  42 atggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 117  Q
    |||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  36793511 atggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 36793586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 42 - 117
Target Start/End: Original strand, 37559326 - 37559401
Alignment:
Q  42 atggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 117  Q
    |||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  37559326 atggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 37559401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 42968224 - 42968150
Alignment:
Q  43 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 117  Q
    ||||||||| ||| ||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  42968224 tggagatgcagggtatcgaaccctgtacctctcgcatgcaaagcaagcgctctaccatttgagctacatccccat 42968150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 36756170 - 36756244
Alignment:
Q  43 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 117  Q
    ||||||||||||| ||||| |||||| |||||||||||| |||||||| ||||||||| ||||||||||||||||    
T  36756170 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcactctaccatctgagctacatccccat 36756244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 42 - 119
Target Start/End: Original strand, 37022194 - 37022271
Alignment:
Q  42 atggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgt 119  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  37022194 atggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccatgt 37022271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 30034381 - 30034301
Alignment:
Q  37 ataaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 117  Q
    ||||||||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  30034381 ataaaatggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 30034301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 39 - 119
Target Start/End: Original strand, 46075148 - 46075228
Alignment:
Q  39 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgt 119  Q
    ||||||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  46075148 aaaatggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccatgt 46075228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 43 - 121
Target Start/End: Complemental strand, 25288034 - 25287956
Alignment:
Q  43 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgttg 121  Q
    ||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  25288034 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccatgttg 25287956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 46972135 - 46972211
Alignment:
Q  39 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 115  Q
    |||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||    
T  46972135 aaaatggagacgcggggaatcgaaccccgtgcctctcgcatgcgaagcgagcgctctaccatatgagctacgtcccc 46972211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 43 - 121
Target Start/End: Original strand, 34984430 - 34984508
Alignment:
Q  43 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgttg 121  Q
    ||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| |||||||||||||| |||||    
T  34984430 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccttgttg 34984508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 23058051 - 23058132
Alignment:
Q  41 aatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgttga 122  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  23058051 aatggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccttgttga 23058132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 39 - 118
Target Start/End: Original strand, 30340907 - 30340986
Alignment:
Q  39 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatg 118  Q
    ||||||||||||| ||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30340907 aaaatggagatgcaggggatcaaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatg 30340986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 43 - 119
Target Start/End: Original strand, 37369512 - 37369588
Alignment:
Q  43 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgt 119  Q
    ||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  37369512 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccatgt 37369588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 23057679 - 23057753
Alignment:
Q  41 aatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 115  Q
    ||||||||||| ||| || ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  23057679 aatggagatgcagggtattgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatcccc 23057753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 23057864 - 23057938
Alignment:
Q  41 aatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 115  Q
    ||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||    
T  23057864 aatggagatgcagggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacaccccc 23057938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 23061980 - 23062054
Alignment:
Q  41 aatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 115  Q
    ||||||||||| ||| || ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  23061980 aatggagatgcagggtattgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatcccc 23062054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 39 - 121
Target Start/End: Original strand, 30320741 - 30320823
Alignment:
Q  39 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgttg 121  Q
    ||||||||||||| ||| ||||||||| || |||| ||||||||||||| |||||||||||||||||||||||||||| ||||    
T  30320741 aaaatggagatgcagggtatcgaaccctgtacctcccgcatgcaaagcgggcgctctaccatttgagctacatccccaagttg 30320823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 23057568 - 23057621
Alignment:
Q  57 atcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctaca 110  Q
    |||||||||| | ||||||||||||||||||||||||||||||| |||||||||    
T  23057568 atcgaaccccatacctctcgcatgcaaagcgagcgctctaccatgtgagctaca 23057621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 23061869 - 23061922
Alignment:
Q  57 atcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctaca 110  Q
    |||||||||| | ||||||||||||||||||||||||||||||| |||||||||    
T  23061869 atcgaaccccatacctctcgcatgcaaagcgagcgctctaccatgtgagctaca 23061922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 42 - 115
Target Start/End: Complemental strand, 43066074 - 43065996
Alignment:
Q  42 atggagatgcgggggatcgaaccccgtgcctctcgcatgcaaa-----gcgagcgctctaccatttgagctacatcccc 115  Q
    |||||||||||||| ||||| |||||| |||||||||||| ||     |||||||||||||||| ||||||||||||||    
T  43066074 atggagatgcggggtatcgagccccgtacctctcgcatgctaagtgatgcgagcgctctaccatatgagctacatcccc 43065996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 42 - 117
Target Start/End: Original strand, 2626071 - 2626146
Alignment:
Q  42 atggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 117  Q
    |||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  2626071 atggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 2626146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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