View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11293A_low_216 (Length: 242)

Name: NF11293A_low_216
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11293A_low_216
NF11293A_low_216
[»] chr7 (8 HSPs)
chr7 (38-229)||(26617742-26617933)
chr7 (89-229)||(39865471-39865611)
chr7 (38-229)||(33190303-33190494)
chr7 (38-165)||(14719370-14719501)
chr7 (38-189)||(7578536-7578687)
chr7 (140-221)||(14719287-14719367)
chr7 (141-202)||(37479556-37479617)
chr7 (38-156)||(35339023-35339141)
[»] chr4 (16 HSPs)
chr4 (38-222)||(52311220-52311404)
chr4 (62-229)||(54687660-54687826)
chr4 (68-213)||(20275938-20276082)
chr4 (38-198)||(5350929-5351089)
chr4 (68-229)||(26997226-26997387)
chr4 (62-229)||(54678540-54678709)
chr4 (41-226)||(17365674-17365858)
chr4 (68-229)||(26992029-26992193)
chr4 (138-229)||(6408036-6408126)
chr4 (139-225)||(22746635-22746721)
chr4 (38-200)||(27360193-27360354)
chr4 (38-229)||(12746524-12746715)
chr4 (176-229)||(14000179-14000230)
chr4 (41-163)||(18902113-18902234)
chr4 (176-227)||(13994875-13994924)
chr4 (108-164)||(20355099-20355155)
[»] chr5 (8 HSPs)
chr5 (38-229)||(16633256-16633446)
chr5 (68-229)||(19779955-19780116)
chr5 (68-222)||(19479453-19479607)
chr5 (38-165)||(17604690-17604821)
chr5 (68-229)||(19783203-19783363)
chr5 (140-202)||(17604824-17604886)
chr5 (38-81)||(21575046-21575089)
chr5 (38-130)||(35105030-35105122)
[»] chr1 (6 HSPs)
chr1 (61-229)||(40274361-40274530)
chr1 (68-229)||(40279150-40279311)
chr1 (59-229)||(29530120-29530291)
chr1 (59-223)||(29547775-29547940)
chr1 (39-202)||(28201654-28201817)
chr1 (107-189)||(27417427-27417509)
[»] chr3 (7 HSPs)
chr3 (116-230)||(8832532-8832646)
chr3 (104-229)||(39875817-39875940)
chr3 (117-229)||(44126711-44126823)
chr3 (38-160)||(21587185-21587306)
chr3 (178-229)||(13921708-13921757)
chr3 (38-154)||(20458819-20458933)
chr3 (38-111)||(20463226-20463299)
[»] chr2 (3 HSPs)
chr2 (38-202)||(19912279-19912443)
chr2 (38-115)||(34111054-34111131)
chr2 (42-164)||(45276354-45276475)
[»] chr8 (6 HSPs)
chr8 (139-225)||(17909890-17909977)
chr8 (171-217)||(10739137-10739183)
chr8 (171-225)||(15007178-15007231)
chr8 (175-229)||(36911929-36911983)
chr8 (138-219)||(10734068-10734149)
chr8 (91-215)||(12145639-12145764)
[»] chr6 (1 HSPs)
chr6 (178-229)||(23599935-23599986)
[»] scaffold0248 (1 HSPs)
scaffold0248 (176-229)||(16258-16311)


Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 38 - 229
Target Start/End: Complemental strand, 26617933 - 26617742
Alignment:
Q  38 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26617933 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 26617834  T
Q  138 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 229  Q
    |||  ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26617833 ttgaatcctataaatagggctcatattgaattgtaaagacacacttgtgaagagaataatacaaagtgttttcatcttcttcttcctcttct 26617742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 89 - 229
Target Start/End: Original strand, 39865471 - 39865611
Alignment:
Q  89 agtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaa 188  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||| | |||  |||||||||||  ||||    
T  39865471 agtgaatagttagtggaccttaattgtcttgatcactcacttactcatcttgtgtactataaatagggctcatatcgtattgcaaagacacactcttgaa 39865570  T
Q  189 gagaataatacaaagtgctttcatcttcttcttcctcttct 229  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  39865571 gagaataatacaaagtgctttcatcttctccttcctcttct 39865611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 38 - 229
Target Start/End: Complemental strand, 33190494 - 33190303
Alignment:
Q  38 ttagtggatttccatcctta-gtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcat 136  Q
    ||||||||| | |||||||| ||||||||| |||||||||   |||||  | |||||||||||| ||||||||| ||  |||||||||||||||| ||||    
T  33190494 ttagtggatgtacatccttaagtctttcaccttcctataatttccattggtaagtgaatagttactggaccttagttgccttgatcactcacttactcat 33190395  T
Q  137 cttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 229  Q
    |||||||  ||||| |||| ||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33190394 cttgtgtattataa-taggtctcatattgtattgcaaagacacacttgtgaagagaataatacaaagtgctttcatcttctccttcctcttct 33190303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 38 - 165
Target Start/End: Complemental strand, 14719501 - 14719370
Alignment:
Q  38 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaata----gttagtggaccttaattatcttgatcactcacttatt 133  Q
    ||||||||| ||| ||||||||||| ||| |||||||||||||||||| ||||||||||    ||||||||||||||||||| |||||||||||  ||||    
T  14719501 ttagtggatgtccgtccttagtcttccaccttcctataacccccattagtgagtgaatatatagttagtggaccttaattattttgatcactcagctatt 14719402  T
Q  134 catcttgtgtcctataaataggactcatattg 165  Q
    ||| |||| || ||||||||||||||||||||    
T  14719401 cattttgtatcttataaataggactcatattg 14719370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 38 - 189
Target Start/End: Original strand, 7578536 - 7578687
Alignment:
Q  38 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 137  Q
    ||||||||| ||||||||||||||| ||| |||| ||||  ||||| | ||| || || || ||||| |||||||||  ||||||| ||||||  | ||     
T  7578536 ttagtggatgtccatccttagtcttccaccttcccataagtcccataagtgaatggatggtcagtggtccttaattactttgatcattcacttgcttata 7578635  T
Q  138 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaag 189  Q
    |||| ||||||||||||||||||||||  | | |||||||||||||| ||||    
T  7578636 ttgtatcctataaataggactcatattatagtataaagacacacttgagaag 7578687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 14719367 - 14719287
Alignment:
Q  140 gtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttctt 221  Q
    |||||||||||||||| ||||||||| | | ||||  ||||||||||||||||||||||||||  |||||||||||||||||    
T  14719367 gtgtcctataaatagggctcatattgtagtgtaaatgcacacttgtgaagagaataatacaaa-agctttcatcttcttctt 14719287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 202
Target Start/End: Complemental strand, 37479617 - 37479556
Alignment:
Q  141 tgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaa 202  Q
    |||||||||||||||||  |||||| | | |||||| ||| |||||||||||||||||||||    
T  37479617 tgtcctataaataggacctatattgcaatgtaaagaaacatttgtgaagagaataatacaaa 37479556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 156
Target Start/End: Complemental strand, 35339141 - 35339023
Alignment:
Q  38 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 137  Q
    ||||||||| |||||| |||||||| ||| |||||||||| ||||| | ||| || || |||| ||| |||||||||  |||||   |||| |  ||||     
T  35339141 ttagtggatgtccatcattagtcttccaccttcctataactcccataagtgaatggatggttaatggtccttaattactttgatatttcacatgctcata 35339042  T
Q  138 ttgtgtcctataaatagga 156  Q
    |||| ||||||||||||||    
T  35339041 ttgtatcctataaatagga 35339023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 38 - 222
Target Start/End: Complemental strand, 52311404 - 52311220
Alignment:
Q  38 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 137  Q
    |||||| || ||||||| ||||||| ||| ||||||||||||| |||  |||||||||||||||||||||||||||   ||||||||||||||| |||||    
T  52311404 ttagtgaatgtccatccctagtcttccaccttcctataacccctattggtgagtgaatagttagtggaccttaatttctttgatcactcacttagtcatc 52311305  T
Q  138 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttc 222  Q
    ||||||||||||||||||| |||||||| | | |||||||||| ||||||||||||||||||||| || ||||||| ||||||||    
T  52311304 ttgtgtcctataaataggattcatattgcagtgtaaagacacatttgtgaagagaataatacaaaatgttttcatcatcttcttc 52311220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 62 - 229
Target Start/End: Complemental strand, 54687826 - 54687660
Alignment:
Q  62 ttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcat 161  Q
    ||||||||||||||||||| |||| | |||||||| |||| |||||| |||| ||||||||||| ||||| ||||||||| | |||||||||||  ||||    
T  54687826 ttcactttcctataacccc-attagtaagtgaataattaggggacctcaattttcttgatcacttacttactcatcttgtatactataaatagggttcat 54687728  T
Q  162 attgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 229  Q
    |||| ||| |||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  54687727 attgtattataaagatacacttgtgaagagaataatacaaagtgatttcatcttctccttcctcttct 54687660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 68 - 213
Target Start/End: Original strand, 20275938 - 20276082
Alignment:
Q  68 ttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaa 167  Q
    ||||||||||  |||||| | ||||||||||||||||||||||| |  |||||||||||||||| ||||||| ||| ||||||||||||||||||||| |    
T  20275938 ttcctataacttccattagtaagtgaatagttagtggaccttaactgccttgatcactcacttactcatcttatgtactataaataggactcatattgta 20276037  T
Q  168 ttctaaagacacacttgtgaagagaataatacaaagtgctttcatc 213  Q
    || ||||||||||| |||||| |||||||||||||| |||||||||    
T  20276038 ttgtaaagacacacatgtgaacagaataatacaaag-gctttcatc 20276082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 38 - 198
Target Start/End: Original strand, 5350929 - 5351089
Alignment:
Q  38 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 137  Q
    ||||||||| ||||||||||||||| ||| ||||||||| | ||||||  |||||||||||||| ||||||||||||| |||||| | |||||| ||||     
T  5350929 ttagtggatgtccatccttagtcttccaccttcctataatctccattagcgagtgaatagttagcggaccttaattattttgatcgc-cacttactcatt 5351027  T
Q  138 ttgtgtcctataaataggactcatattgaatt-ctaaagacacacttgtgaagagaataata 198  Q
    |||||||||||||||||||||||||||  |||   ||||||||||||||||| |||||||||    
T  5351028 ttgtgtcctataaataggactcatattttattgaaaaagacacacttgtgaatagaataata 5351089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 68 - 229
Target Start/End: Original strand, 26997226 - 26997387
Alignment:
Q  68 ttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaa 167  Q
    |||||||||| | ||||| | |||||||||| |||| ||||||||    |||| |||| ||||| ||||||||||| ||||||||||||||||||||  |    
T  26997226 ttcctataactctcattagtaagtgaatagtcagtgaaccttaatagctttgaacactaacttactcatcttgtgtactataaataggactcatattata 26997325  T
Q  168 ttctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 229  Q
    ||  ||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  26997326 ttgcaaagacatacttgtgaagagaataatacaaagtgctttcatcttctcctttctcttct 26997387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 62 - 229
Target Start/End: Complemental strand, 54678709 - 54678540
Alignment:
Q  62 ttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactc--acttattcatcttgtgtcctataaataggactc 159  Q
    ||||| |||||||||||||| ||| | ||||||||||| |||||||||||||   |||||||| |  ||||| |||||||||||  ||||||||||||||    
T  54678709 ttcaccttcctataacccccgttattaagtgaatagttggtggaccttaatttcattgatcacacttacttactcatcttgtgtattataaataggactc 54678610  T
Q  160 atattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 229  Q
    |||||  ||| |||||| ||  ||||||||||||||||| |||||| ||||||||||| |||||||||||    
T  54678609 atattatattgtaaagatacgtttgtgaagagaataataaaaagtgttttcatcttctccttcctcttct 54678540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 41 - 226
Target Start/End: Original strand, 17365674 - 17365858
Alignment:
Q  41 gtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttg 140  Q
    |||||| | ||||||||||||| || |||| |||||||  ||||| |||||||||||||||||||||||||||   ||||||||||||||| ||||||||    
T  17365674 gtggatgttcatccttagtcttccattttcttataaccttcattagtgagtgaatagttagtggaccttaatttctttgatcactcacttactcatcttg 17365773  T
Q  141 tgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctct 226  Q
    ||||||||||||| | ||| ||||  | | |||||| ||  ||||||| | ||||||||||| || ||||| | ||||||||||||    
T  17365774 tgtcctataaataaggctc-tattatagtgtaaagaaacctttgtgaacaaaataatacaaaatgttttcaccatcttcttcctct 17365858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 68 - 229
Target Start/End: Original strand, 26992029 - 26992193
Alignment:
Q  68 ttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaa 167  Q
    |||||||||  | ||||| | |||||||||||||||||||||||||  |||||||||| |||||||||||  |||| ||||||||||| ||||||||  |    
T  26992029 ttcctataaatctcattagtaagtgaatagttagtggaccttaattgccttgatcactaacttattcatcccgtgtactataaatagggctcatattata 26992128  T
Q  168 ttctaaagacacacttgtgaagag---aataatacaaagtgctttcatcttcttcttcctcttct 229  Q
    ||  ||||| | ||||||||||||   ||||||||||||| ||||||||||||  ||||||||||    
T  26992129 ttgcaaagatatacttgtgaagagaataataatacaaagtactttcatcttctctttcctcttct 26992193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 138 - 229
Target Start/End: Original strand, 6408036 - 6408126
Alignment:
Q  138 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 229  Q
    ||||||||||||||||||||  |||||| |   ||||| |||||||||||||||||||||||||| | ||||||||||||||||| ||||||    
T  6408036 ttgtgtcctataaataggacctatattgcaaagtaaaggcacacttgtgaagagaataatacaaaat-ctttcatcttcttcttcttcttct 6408126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 225
Target Start/End: Original strand, 22746635 - 22746721
Alignment:
Q  139 tgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctc 225  Q
    |||||||||||||||||||  | |||  | | ||| ||||| |||||||||||||||||||||||| |||||||||||||| |||||    
T  22746635 tgtgtcctataaataggacctacattacaatgtaatgacacccttgtgaagagaataatacaaagtactttcatcttcttcctcctc 22746721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 200
Target Start/End: Original strand, 27360193 - 27360354
Alignment:
Q  38 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 137  Q
    ||||||||| | ||||  ||||||| ||| |||||||||| || || ||||| |  || |||||||| |||||||||  ||||||| |||||| |||||     
T  27360193 ttagtggatgttcatcagtagtcttccaccttcctataactcc-ataaatgaatagatggttagtggtccttaattactttgatcattcacttgttcata 27360291  T
Q  138 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataataca 200  Q
    |||| ||||||||||||||||  ||||  | | ||||||||| |||||||| | |||||||||    
T  27360292 ttgtatcctataaataggacttgtattatagtgtaaagacacgcttgtgaaaaaaataataca 27360354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 229
Target Start/End: Complemental strand, 12746715 - 12746524
Alignment:
Q  38 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 137  Q
    ||||||||| |||||||| | |||| ||| ||||||||||| | |||| ||| || ||| ||| ||| ||||||| |  ||||||| ||||||  ||||     
T  12746715 ttagtggatgtccatcctcaatcttccaccttcctataaccactattagtgaatgtatacttaatggtccttaatgactttgatcattcacttgctcat- 12746617  T
Q  138 ttgtgtcctataaataggactcatattgaattctaaa-gacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 229  Q
    ||| ||||||||||||| ||  |||||  | | | || ||||||||| |||| ||||||||||||  | |||||||||||||| |||||||||    
T  12746616 ttgcgtcctataaatagaacctatattataatgtgaatgacacacttatgaaaagaataatacaatatactttcatcttcttcctcctcttct 12746524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 14000179 - 14000230
Alignment:
Q  176 acacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 229  Q
    ||||||||||||||||||||| |||||  ||||||||| |||||||||||||||    
T  14000179 acacacttgtgaagagaataacacaaa--gctttcatcatcttcttcctcttct 14000230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 163
Target Start/End: Complemental strand, 18902234 - 18902113
Alignment:
Q  41 gtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttg 140  Q
    |||||| | |||||||| |||||||| ||||||||||| |||||| ||| || ||  ||| ||| |||||||| | ||||||  ||||||  |||| |||    
T  18902234 gtggatgttcatccttaatctttcaccttcctataacctccattagtgaatggatgcttaatggtccttaattgttttgatctttcacttgctcat-ttg 18902136  T
Q  141 tgtcctataaataggactcatat 163  Q
    ||||||||||||  |||||||||    
T  18902135 tgtcctataaatctgactcatat 18902113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 13994875 - 13994924
Alignment:
Q  176 acacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctctt 227  Q
    ||||||||||||||||||||| |||||  ||||||||| |||||||||||||    
T  13994875 acacacttgtgaagagaataacacaaa--gctttcatcatcttcttcctctt 13994924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 20355155 - 20355099
Alignment:
Q  108 ttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatatt 164  Q
    |||||||  ||||||| ||| || ||||| |||| ||||||||||||||||||||||    
T  20355155 ttaattactttgatcattcagttgttcatattgtatcctataaataggactcatatt 20355099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 38 - 229
Target Start/End: Complemental strand, 16633446 - 16633256
Alignment:
Q  38 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 137  Q
    ||||||||| ||||||||||||||| ||| ||||||||||||| ||||  |||||||||||||||||||||||||||  ||||||| ||||||| ||| |    
T  16633446 ttagtggatgtccatccttagtcttccaccttcctataacccc-attagcgagtgaatagttagtggaccttaattactttgatcattcacttactcaac 16633348  T
Q  138 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 229  Q
    |||||||||||||||||| ||||||||| |||  |||||||| |||||||||||||||||| |||  | ||||||| || ||||| ||||||    
T  16633347 ttgtgtcctataaatagggctcatattgtattgcaaagacacgcttgtgaagagaataatataaaaggttttcatcatcatcttcttcttct 16633256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 68 - 229
Target Start/End: Complemental strand, 19780116 - 19779955
Alignment:
Q  68 ttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaa 167  Q
    |||||||||| | ||||| | |||||||||||||||||||||||||| |||||||||||||||| || |||||||| ||||||||||| ||||||||| |    
T  19780116 ttcctataactctcattagtaagtgaatagttagtggaccttaattaccttgatcactcacttactcgtcttgtgtactataaatagggctcatattgta 19780017  T
Q  168 ttctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 229  Q
    ||  |||||||||||  ||||||||||||||||||||||||| |||||||  ||||||||||    
T  19780016 ttacaaagacacactcttgaagagaataatacaaagtgcttttatcttctcattcctcttct 19779955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 68 - 222
Target Start/End: Complemental strand, 19479607 - 19479453
Alignment:
Q  68 ttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaa 167  Q
    |||||||||| | ||||| | |||||||||||||||||||||||||  ||||||||||| |||| ||||||||||| ||||||||||| || |||||| |    
T  19479607 ttcctataactctcattagtaagtgaatagttagtggaccttaattgccttgatcactcgcttactcatcttgtgtactataaatagggcttatattgta 19479508  T
Q  168 ttctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttc 222  Q
    || ||||||||||||| | |||||||||||||||||| |||||||||||||||||    
T  19479507 ttgtaaagacacacttataaagagaataatacaaagttctttcatcttcttcttc 19479453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 38 - 165
Target Start/End: Original strand, 17604690 - 17604821
Alignment:
Q  38 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaata----gttagtggaccttaattatcttgatcactcacttatt 133  Q
    ||||||||| ||||||||||||||| ||| |||||||||||||||||| ||||||||||    ||||||||||||||||||| |||||||||||  ||||    
T  17604690 ttagtggatgtccatccttagtcttccaccttcctataacccccattagtgagtgaatatatagttagtggaccttaattattttgatcactcagctatt 17604789  T
Q  134 catcttgtgtcctataaataggactcatattg 165  Q
    ||| |||| || ||||||||||||||||||||    
T  17604790 cattttgtatcttataaataggactcatattg 17604821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 68 - 229
Target Start/End: Complemental strand, 19783363 - 19783203
Alignment:
Q  68 ttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaa 167  Q
    |||||||||| | ||||| | ||||||||||||||||| |||||||   || |||||||||||| ||||||||||| ||||||||||  ||||||||| |    
T  19783363 ttcctataactctcattagtaagtgaatagttagtggaacttaattgctttcatcactcacttactcatcttgtgtactataaatagtgctcatattgta 19783264  T
Q  168 ttctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 229  Q
    | | |||||||||||  ||||||||||||||||||||||||| ||||||| ||| |||||||    
T  19783263 tgc-aaagacacactcttgaagagaataatacaaagtgcttttatcttctcctttctcttct 19783203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 17604824 - 17604886
Alignment:
Q  140 gtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaa 202  Q
    |||||||||||||||| ||||||||| | | ||||  ||||||||||||||||||||||||||    
T  17604824 gtgtcctataaatagggctcatattgtagtgtaaatgcacacttgtgaagagaataatacaaa 17604886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 81
Target Start/End: Complemental strand, 21575089 - 21575046
Alignment:
Q  38 ttagtggatttccatccttagtctttcactttcctataaccccc 81  Q
    ||||||||| ||||||||||||||| ||| ||||||||||||||    
T  21575089 ttagtggatgtccatccttagtcttccaccttcctataaccccc 21575046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 35105030 - 35105122
Alignment:
Q  38 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcactt 130  Q
    ||||||||| ||||||||||||||| ||| || | ||||| ||||| | ||| || || |||||||  |||||||||  ||||||| ||||||    
T  35105030 ttagtggatgtccatccttagtcttacaccttgcaataactcccataagtgaatggatggttagtgatccttaattactttgatcattcactt 35105122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 61 - 229
Target Start/End: Complemental strand, 40274530 - 40274361
Alignment:
Q  61 tttcactttcctataacccccattaatgagtgaa-tagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactc 159  Q
    |||||| ||| |||||| ||||||| | |||||| |||||||||||| ||||||  |||||||||||||||| |||||||||||  |||||||||| ||     
T  40274530 tttcaccttcttataactcccattagtaagtgaaatagttagtggactttaattgccttgatcactcacttactcatcttgtgtattataaatagggcta 40274431  T
Q  160 atattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 229  Q
    |||||| |||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  40274430 atattgtattgcaaagacacacttgtgaagagaataatacaaagtgctttcatcttctccttcctcttct 40274361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 68 - 229
Target Start/End: Complemental strand, 40279311 - 40279150
Alignment:
Q  68 ttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaa 167  Q
    |||||||||| ||||||| | |||||||||||||||||||||||||  |||||||||||||||| ||||||||||| |||||||||||  |||||||| |    
T  40279311 ttcctataactcccattagtaagtgaatagttagtggaccttaattgccttgatcactcacttactcatcttgtgtactataaatagggttcatattgta 40279212  T
Q  168 ttctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 229  Q
    ||  ||||||||| ||||||||||||||||| |||||| ||||||||||| ||| |||||||    
T  40279211 ttgcaaagacacatttgtgaagagaataatataaagtgttttcatcttctcctttctcttct 40279150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 229
Target Start/End: Original strand, 29530120 - 29530291
Alignment:
Q  59 tctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggact 158  Q
    |||| ||||||||| ||| |||||| | | | || || |||||||| ||||||||   ||||||| ||||||  |||| ||||||| ||||||||||||     
T  29530120 tcttccactttcctgtaaaccccatcagtaaatgcatggttagtggtccttaattggtttgatcattcacttgctcat-ttgtgtcatataaataggacc 29530218  T
Q  159 catattgaattctaaaga-cacacttgtgaag-agaataatacaaagtgctttcatcttcttcttcctcttct 229  Q
     |||||| | | |||||| ||||||||  ||  |||||||||||||||| |||||||| ||||||||||||||    
T  29530219 tatattgtaatgtaaagaacacacttgaaaaatagaataatacaaagtgttttcatctccttcttcctcttct 29530291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 223
Target Start/End: Original strand, 29547775 - 29547940
Alignment:
Q  59 tctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggact 158  Q
    |||| ||| ||||||||| |||||||| | | || || |||||||| ||||||||   ||||||| ||||||  |||| || |||||||||||||||||     
T  29547775 tcttccaccttcctataatccccattagtaaatgcatggttagtggtccttaatttgtttgatcattcacttgctcat-ttatgtcctataaataggacc 29547873  T
Q  159 catattgaattctaaaga-cacacttgtgaa-gagaataatacaaagtgctttcatcttcttcttcc 223  Q
     |||||| | | |||||| ||||||||  || |||||||||||||| |  |||||||||||||||||    
T  29547874 tatattgtaatgtaaagaacacacttgaaaaagagaataatacaaaatattttcatcttcttcttcc 29547940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 202
Target Start/End: Complemental strand, 28201817 - 28201654
Alignment:
Q  39 tagtggatttccatccttagtctttcactttcctataaccc-ccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 137  Q
    |||||||| |||||||||  |||| ||| |||||||||||| |||||| ||| || || |||||| | | ||||||   ||||| | |||||| |||||     
T  28201817 tagtggatgtccatcctttatcttccaccttcctataaccctccattagtgaatgtatggttagtagtctttaattgctttgataattcacttgttcat- 28201719  T
Q  138 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaa 202  Q
    || ||||||||||||| ||||||||||  | | |||   ||||||||| ||||||||| ||||||    
T  28201718 ttatgtcctataaatatgactcatattttaatgtaatagcacacttgtaaagagaatagtacaaa 28201654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 189
Target Start/End: Complemental strand, 27417509 - 27417427
Alignment:
Q  107 cttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaag 189  Q
    ||||||||  ||||||| ||||||| |||| |||| || |||||||||||||| ||||  | | |||||||||||||| ||||    
T  27417509 cttaattaatttgatcattcacttactcatattgtatcttataaataggactcgtattataatgtaaagacacacttgagaag 27417427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 116 - 230
Target Start/End: Complemental strand, 8832646 - 8832532
Alignment:
Q  116 cttgatcactcacttattcatcttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatctt 215  Q
    |||||||||||||||| ||||||||||| |||||||||||  |||||||| |||  ||||||||| |  ||||||||||||||||||||| ||||||| |    
T  8832646 cttgatcactcacttactcatcttgtgtactataaatagggttcatattgtattgcaaagacacagtcttgaagagaataatacaaagtgatttcatcct 8832547  T
Q  216 cttcttcctcttctc 230  Q
    || ||||||||||||    
T  8832546 ctccttcctcttctc 8832532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 104 - 229
Target Start/End: Original strand, 39875817 - 39875940
Alignment:
Q  104 gaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaag 203  Q
    ||||||||||  |||||||||||||||| ||||||||||| |||||||||   ||| ||||| |||  |||||||||||||||||||||  ||||||||     
T  39875817 gaccttaattgccttgatcactcacttactcatcttgtgtactataaataaagctcctattgtattgcaaagacacacttgtgaagaga--aatacaaat 39875914  T
Q  204 tgctttcatcttcttcttcctcttct 229  Q
    | |||||||||||||| |||| ||||    
T  39875915 tactttcatcttcttcctccttttct 39875940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 117 - 229
Target Start/End: Complemental strand, 44126823 - 44126711
Alignment:
Q  117 ttgatcactcacttattcatcttgtgtcctataaataggactcatattgaattctaaa-gacacacttgtgaagagaataatacaaagtgctttcatctt 215  Q
    ||||||| ||||||  |||| ||||||||||||||||||||  |||||| | | | || |||||||||||||||||||||||||||||| ||||||||||    
T  44126823 ttgatcattcacttgctcat-ttgtgtcctataaataggacctatattgtaatgtgaatgacacacttgtgaagagaataatacaaagtactttcatctt 44126725  T
Q  216 cttcttcctcttct 229  Q
    |||||| |||||||    
T  44126724 cttctttctcttct 44126711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 160
Target Start/End: Complemental strand, 21587306 - 21587185
Alignment:
Q  38 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 137  Q
    ||||||| | |||| ||||| |||| ||| |||||||||||||||||| |||  | || |||||||  |||||| |   ||||||| ||||||  ||||     
T  21587306 ttagtgggtgtccacccttaatcttccaccttcctataacccccattagtgaaagtatggttagtgatccttaactgctttgatcattcacttgctcat- 21587208  T
Q  138 ttgtgtcctataaataggactca 160  Q
    |||||||||||||||||||||||    
T  21587207 ttgtgtcctataaataggactca 21587185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 13921708 - 13921757
Alignment:
Q  178 acacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 229  Q
    ||||||||||||||||||| |||||  ||||||||| |||||||||||||||    
T  13921708 acacttgtgaagagaataacacaaa--gctttcatcatcttcttcctcttct 13921757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 154
Target Start/End: Complemental strand, 20458933 - 20458819
Alignment:
Q  38 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 137  Q
    ||||||||| |||||||||| |||| ||| ||||||||| |||||||| ||| ||  | ||||||| ||||||| | | ||||||| ||||||  ||||     
T  20458933 ttagtggatgtccatccttaatcttccaccttcctataa-ccccattagtgaatgtttggttagtgaaccttaaatgttttgatcattcacttgctcat- 20458836  T
Q  138 ttgtgtcctataaatag 154  Q
    ||||| |||||||||||    
T  20458835 ttgtgacctataaatag 20458819  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 20463299 - 20463226
Alignment:
Q  38 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaa 111  Q
    ||||||||| ||||| ||||||||| | | ||||||||| ||| |||| ||| || || |||||||||||||||    
T  20463299 ttagtggatgtccattcttagtcttcctccttcctataatccctattagtgaatgtatggttagtggaccttaa 20463226  T

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Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 38 - 202
Target Start/End: Original strand, 19912279 - 19912443
Alignment:
Q  38 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 137  Q
    ||||||||| |||| ||||| |||| ||| ||||||||||||| |||| ||| || || |||||| | ||||||||   ||||||||||||||  ||||     
T  19912279 ttagtggatgtccacccttaatcttccaccttcctataacccctattattgaatgtatggttagtagtccttaattgctttgatcactcacttgctcat- 19912377  T
Q  138 ttgtgtcctataaataggactcatatt-gaattctaaagacacacttgtgaagagaataatacaaa 202  Q
    ||||||||||||||||||||  |||||  |||   ||| | |||||||||||||||||||||||||    
T  19912378 ttgtgtcctataaataggacctatattataatgtaaaatatacacttgtgaagagaataatacaaa 19912443  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 34111131 - 34111054
Alignment:
Q  38 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattat 115  Q
    ||||||||| |||||||||| || | ||| |||||||||| | ||||| |||||||||||||||||||||||||||||    
T  34111131 ttagtggatgtccatccttaatcatccaccttcctataactcgcattagtgagtgaatagttagtggaccttaattat 34111054  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 164
Target Start/End: Original strand, 45276354 - 45276475
Alignment:
Q  42 tggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgt 141  Q
    ||||| ||||||| |  |||| ||| ||||||||||||   ||| ||| || || |||||||| |||||||  | |||| || ||||||| |||| ||||    
T  45276354 tggatgtccatccctcatcttccaccttcctataacccatgttagtgaatgtatggttagtggtccttaatagttttgaccattcacttactcat-ttgt 45276452  T
Q  142 gtcctataaataggactcatatt 164  Q
    |||||||||||||||||||||||    
T  45276453 gtcctataaataggactcatatt 45276475  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 139 - 225
Target Start/End: Original strand, 17909890 - 17909977
Alignment:
Q  139 tgtgtcctataaataggactcatattgaattctaaaga-cacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctc 225  Q
    |||||||||||||||||||| ||||   | | |||||| |||||||| ||||||||||||||||||| |||||||||||| |||||||    
T  17909890 tgtgtcctataaataggacttatatctcaatgtaaagaacacacttgagaagagaataatacaaagtactttcatcttctccttcctc 17909977  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 10739137 - 10739183
Alignment:
Q  171 taaagacacacttgtgaagagaataatacaaagtgctttcatcttct 217  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||    
T  10739137 taaagatatacttgtgaagagaataatacaaagtgctttcatcttct 10739183  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 15007178 - 15007231
Alignment:
Q  171 taaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctc 225  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||| |||||||    
T  15007178 taaagacacactggtgaagaga-taatacaaagtgctttcatcttctccttcctc 15007231  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 36911983 - 36911929
Alignment:
Q  175 gacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 229  Q
    ||||||||| |||||||||||||| |||||| ||||| |||||||||||||||||    
T  36911983 gacacacttctgaagagaataataaaaagtgttttcaccttcttcttcctcttct 36911929  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 10734068 - 10734149
Alignment:
Q  138 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttc 219  Q
    |||| |||||||||||||||  | ||||   | |||||| | |||||||||||||||||||||||||| |||||||||||||    
T  10734068 ttgtatcctataaataggacctacattgtcatgtaaagatatacttgtgaagagaataatacaaagtgttttcatcttcttc 10734149  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 215
Target Start/End: Complemental strand, 12145764 - 12145639
Alignment:
Q  91 tgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaa-taggactcatattgaattctaaagacacacttgtgaag 189  Q
    ||||||||||||||  ||||||||  ||||||||||||||  |||| |||||||||||||| || ||||||| |   | | |||| |||||||| |||||    
T  12145764 tgaatagttagtggttcttaattactttgatcactcacttgctcattttgtgtcctataaaataagactcatttgttagtgtaaaaacacacttctgaag 12145665  T
Q  190 agaataatacaaagtgctttcatctt 215  Q
    || |||||||| |  |||||||||||    
T  12145664 aggataatacacaaagctttcatctt 12145639  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 23599986 - 23599935
Alignment:
Q  178 acacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 229  Q
    |||||| |||||||||||||||||| ||||||||||||||||||| ||||||    
T  23599986 acacttatgaagagaataatacaaaatgctttcatcttcttcttcatcttct 23599935  T

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Target: scaffold0248 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 16258 - 16311
Alignment:
Q  176 acacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttct 229  Q
    |||||| |||||||| |||||||||||||||||| || || |||||||||||||    
T  16258 acacacctgtgaagaaaataatacaaagtgcttttatatttttcttcctcttct 16311  T

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