View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_22 (Length: 423)
Name: NF11293A_low_22
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 192 - 327
Target Start/End: Original strand, 11505443 - 11505578
Alignment:
| Q |
192 |
tcaacgtctttgttgaaactttctgatcagaatgacgtttgaaagaaactctccggcaaggtgctacatgactccgccatcgtcgttgtcctcgtggaaa |
291 |
Q |
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| T |
11505443 |
tcaacgtctttgttgaaactttctgatcagaatgacgtttgaaagaaactctccggcaaggtgctacatgactccgccatcatcgtcgtcctcgtggaaa |
11505542 |
T |
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| Q |
292 |
tcaagacctgtacgttctcctactgtgccatattct |
327 |
Q |
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| T |
11505543 |
tcaagacctgtacgttctcctactgtgccattttct |
11505578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 200 - 320
Target Start/End: Original strand, 11498320 - 11498431
Alignment:
| Q |
200 |
tttgttgaaactttctgatcagaatgacgtttgaaagaaactctccggcaaggtgctacatgactccgccatcgtcgttgtcctcgtggaaatcaagacc |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || ||||||||||||||||| |
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| T |
11498320 |
tttgttgaaactttctgatcagaatgacgtttgaaagaaactctccggcattgtgctacatgatgccgcc---------gtggtcgtggaaatcaagacc |
11498410 |
T |
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| Q |
300 |
tgtacgttctcctactgtgcc |
320 |
Q |
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| T |
11498411 |
tatacgttctcctactgtgcc |
11498431 |
T |
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