View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_222 (Length: 241)
Name: NF11293A_low_222
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_222 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 38322608 - 38322848
Alignment:
| Q |
1 |
tgttagccataaagtacaaccctgattggcaaaacgtgcaggttcatttttctatactaaatggtcaatgtaatcatatttatgaacttatgatcttatt |
100 |
Q |
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| T |
38322608 |
tgttagccataaagtacaaccctgattggcaaaaagtgcaggttcatttttctatactatatggtcaatgtaatcatatttatgaacttatgatcttatt |
38322707 |
T |
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| Q |
101 |
aattaatagtagcaaataatgttgaatgtatttgcgcagctgacagaaaacaaaggatatcgacttgtcgaaagtgctgctcaaataaatgcctcaattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38322708 |
aattaatagtagcaaataatgttgaatgtatttgtgcagctgaaagaaaacaaaggatatcgacttgtcgaaagtaatgctcaaataaatgcctcaattt |
38322807 |
T |
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| Q |
201 |
cagaatctaaagtccatccttcagagattgaagtgatagaa |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
38322808 |
cagaatctaaagtccatccttcagagattgaagtgatagaa |
38322848 |
T |
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