View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11293A_low_228 (Length: 239)
Name: NF11293A_low_228
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_228 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 38932242 - 38932026
Alignment:
| Q |
10 |
aggttcgttatgtgaaacagggtgaccttattgctattccacctggtgttccttactggacctacaattacggcaataccccgcttattattgtcactct |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
38932242 |
aggttcgttatgtgaaacagggtgaccttattgctattccacctggtgttccttactggacctacaattacggcaatacccctcttattattgtcactct |
38932143 |
T |
|
| Q |
110 |
cctcgacacttccaataaactaaaccaactcgatcgtatcccaagagtaagcaacattaattataatctaacaattactcctaaatgcaaccaactttgt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38932142 |
cctcgacacttccaataaactaaaccaactcgatcgtatcccaagagtaagcaacattaattataatctaacaattactcctaaatgcaaccaactttgt |
38932043 |
T |
|
| Q |
210 |
tatatataaatgattca |
226 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
38932042 |
tatatataaatcattca |
38932026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University