View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11293A_low_231 (Length: 238)

Name: NF11293A_low_231
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11293A_low_231
NF11293A_low_231
[»] chr3 (3 HSPs)
chr3 (7-233)||(53984798-53985024)
chr3 (10-232)||(53971094-53971315)
chr3 (15-71)||(53071908-53071964)
[»] chr4 (1 HSPs)
chr4 (10-71)||(34036297-34036358)
[»] chr2 (1 HSPs)
chr2 (7-71)||(6688093-6688157)
[»] chr1 (1 HSPs)
chr1 (10-70)||(16163998-16164058)
[»] chr7 (3 HSPs)
chr7 (30-71)||(19935380-19935421)
chr7 (30-71)||(19966519-19966560)
chr7 (24-71)||(31014482-31014529)


Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 7 - 233
Target Start/End: Complemental strand, 53985024 - 53984798
Alignment:
Q  7 gaagtggatgctagacgtgcttcaacatagtcccaaacttcaacatcttaccattcatcaggtttaagatatgataaggataatttgacgatttaattta 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53985024 gaagtggatgctagacgtgcttcaacatagtcccaaacttcaacatcttaccattcatcaggtttaagatatgataaggataatttgacgatttaattta 53984925  T
Q  107 atttggtagatctacctctacacacgtcttaatgctccctccatcttattacaggaaatagagaatggaatttatgaggacatttggcactatccacaaa 206  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53984924 atttggtaaatctacctctacacacgtcttaatgctccctccatcttattacaggaaatagagaatggaatttatgaggacatttggcactatccacaaa 53984825  T
Q  207 atattccgacgtgcatttcatctcagt 233  Q
    |||||||||||||||||||||||||||    
T  53984824 atattccgacgtgcatttcatctcagt 53984798  T

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Target: chr3; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 10 - 232
Target Start/End: Complemental strand, 53971315 - 53971094
Alignment:
Q  10 gtggatgctagacgtgcttcaacatagtcccaaacttcaacatcttaccattcatcaggtttaaga-tatgataaggataatttgacgatttaatttaat 108  Q
    ||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||| | | | |||||| |||||||||||| |||||||||||||    
T  53971315 gtggatgctagacgtgctctaacatagtccgaaacttcaacatcttaccattcatcaggtatgatactatgattaggataatttgatgatttaatttaat 53971216  T
Q  109 ttggtagatctacctctacacacgtcttaatgctccctccatcttattacaggaaatagagaatggaatttatgaggacatttggcactatccacaaaat 208  Q
    |||||| || |||||||  ||| |||||| | | |||||| |||||||  |||| || ||| |||||||||||||||||| ||||||  | |||||||||    
T  53971215 ttggtaaatatacctct--acatgtcttactaccccctccgtcttattgtaggagatggaggatggaatttatgaggacaattggcaggacccacaaaat 53971118  T
Q  209 attccgacgtgcatttcatctcag 232  Q
     ||||||| || ||||||||||||    
T  53971117 gttccgacatgtatttcatctcag 53971094  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 53071908 - 53071964
Alignment:
Q  15 tgctagacgtgcttcaacatagtcccaaacttcaacatcttaccattcatcaggttt 71  Q
    |||||||  |||||||||| ||||| || ||||||||||||| ||||||| ||||||    
T  53071908 tgctagaaatgcttcaacacagtccaaagcttcaacatcttatcattcatgaggttt 53071964  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 34036297 - 34036358
Alignment:
Q  10 gtggatgctagacgtgcttcaacatagtcccaaacttcaacatcttaccattcatcaggttt 71  Q
    ||||||||||||  |||||||||| |||||||| ||||||||||||| ||||||| ||||||    
T  34036297 gtggatgctagaaatgcttcaacacagtcccaagcttcaacatcttatcattcatgaggttt 34036358  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 6688093 - 6688157
Alignment:
Q  7 gaagtggatgctagacgtgcttcaacatagtcccaaacttcaacatcttaccattcatcaggttt 71  Q
    |||||||||| ||||  |||||||||| |||||||| ||||||||||||| ||||||| ||||||    
T  6688093 gaagtggatggtagaaatgcttcaacacagtcccaagcttcaacatcttatcattcatgaggttt 6688157  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 16164058 - 16163998
Alignment:
Q  10 gtggatgctagacgtgcttcaacatagtcccaaacttcaacatcttaccattcatcaggtt 70  Q
    |||||||||||| ||||||||||| || ||||| ||| |||||||| ||||||||||||||    
T  16164058 gtggatgctagaagtgcttcaacagaggcccaagcttgaacatcttgccattcatcaggtt 16163998  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 19935380 - 19935421
Alignment:
Q  30 aacatagtcccaaacttcaacatcttaccattcatcaggttt 71  Q
    ||||| |||||||||||||| |||||||||||||||||||||    
T  19935380 aacattgtcccaaacttcaaaatcttaccattcatcaggttt 19935421  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 19966519 - 19966560
Alignment:
Q  30 aacatagtcccaaacttcaacatcttaccattcatcaggttt 71  Q
    ||||| |||||||||||||| |||||||||||||||||||||    
T  19966519 aacattgtcccaaacttcaaaatcttaccattcatcaggttt 19966560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 31014482 - 31014529
Alignment:
Q  24 tgcttcaacatagtcccaaacttcaacatcttaccattcatcaggttt 71  Q
    |||||||||| |||||||| ||||||||||||| ||||||| ||||||    
T  31014482 tgcttcaacacagtcccaagcttcaacatcttatcattcataaggttt 31014529  T

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