View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_237 (Length: 236)
Name: NF11293A_low_237
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_237 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0945 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 3 - 236
Target Start/End: Original strand, 24546007 - 24546239
Alignment:
| Q |
3 |
tataattgaagtgtaaaaccaataagaggctcttcagcctaatcttaaggatgaagtcaatctttgttaatctgagtctactctaaattgaagcaaacac |
102 |
Q |
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| T |
24546007 |
tataattgaagtgtaaaaccaataagaggctcttcagcctaatcttaaagatgaagtcaatctttgttaatttgagtctactctaaattgaagcaaacac |
24546106 |
T |
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| Q |
103 |
tatggaattaccggtccaaataaaagaagcattcatgggtttgtagaaagaacgaaaacagaagcaattatggccatgccatttatatcataatagagag |
202 |
Q |
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| T |
24546107 |
tatggaattaccagtccaaa-aaaagaagcattcatgggtttgtagaaagaacgaaaaaagaagcaatgatggccatgtcatttatatcataatagagag |
24546205 |
T |
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| Q |
203 |
cttaattttgtaatgtaattagtaaaaggggtaa |
236 |
Q |
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| T |
24546206 |
cttaattttgtaatataattagtaaaaggggtaa |
24546239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0945 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0945
Description:
Target: scaffold0945; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 783 - 722
Alignment:
| Q |
84 |
tctaaattgaagcaaacactatggaattaccg-gtccaaataaaagaagcattcatgggttt |
144 |
Q |
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|||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||| |
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| T |
783 |
tctaaattgaagcaaacactttggaatgaccaagtccaaataaaagaagcattcatgggttt |
722 |
T |
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