View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11293A_low_238 (Length: 236)
Name: NF11293A_low_238
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_238 |
 | |
|
| [»] scaffold0029 (1 HSPs) |
| | |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
| [»] scaffold0131 (1 HSPs) |
| | |
|
| [»] scaffold0418 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 8654986 - 8654786
Alignment:
| Q |
1 |
catcaagaagtaaagccccacactccgctaacaagnnnnnnnnnnacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaac |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
8654986 |
catcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaac |
8654887 |
T |
|
| Q |
101 |
agataacaagtctgccacagacataaacttattctctgttaactcaaacagcctacgaaaacggacactaaaaggaacatcccctaaccacctatccaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8654886 |
agataacaagtctgccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaac |
8654787 |
T |
|
| Q |
201 |
c |
201 |
Q |
| |
|
| |
|
|
| T |
8654786 |
c |
8654786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 47541152 - 47541352
Alignment:
| Q |
1 |
catcaagaagtaaagccccacactccgctaacaagnnnnnnnnnnacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaac |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| || ||||||| | ||||||||||||||||| ||| ||| ||||||||||||||| |
|
|
| T |
47541152 |
catcaagaagtaaagccctacactccgctaacatctcctccttccactgccacaaacgacgtctccacctccacataactcccggctgctccgaatcaac |
47541251 |
T |
|
| Q |
101 |
agataacaagtctgccacagacataaacttattctctgttaactcaaacagcctacgaaaacggacactaaaaggaacatcccctaaccacctatccaac |
200 |
Q |
| |
|
||| |||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||| |||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
47541252 |
agaaaacaagtctgccacagacatgaacttattctctgttaactcaaacagtctacaaaaacgaacacaaaaaggaacatcccctaaccacctatcaaac |
47541351 |
T |
|
| Q |
201 |
c |
201 |
Q |
| |
|
| |
|
|
| T |
47541352 |
c |
47541352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 49 - 194
Target Start/End: Complemental strand, 3129847 - 3129702
Alignment:
| Q |
49 |
gccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaagtctgccacagacataaacttattctctgttaactcaaa |
148 |
Q |
| |
|
||||||| | |||||||||||||||| ||| || |||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3129847 |
gccacaaacaacgtctccacctccacgtaacccctagctgctccgaatcaatagagaacaagtctgccacagacatgaacttattctctgttaactcaaa |
3129748 |
T |
|
| Q |
149 |
cagcctacgaaaacggacactaaaaggaacatcccctaaccaccta |
194 |
Q |
| |
|
||| |||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3129747 |
cagtctactaaaacggacacaaaaaggaacatcccctaaccaccta |
3129702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 49 - 187
Target Start/End: Complemental strand, 7663104 - 7662966
Alignment:
| Q |
49 |
gccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaagtctgccacagacataaacttattctctgttaactcaaa |
148 |
Q |
| |
|
||||||| ||||| ||||||||||| |||| ||| ||||||| |||||||||| ||||||||||||| |||||| | |||||||||| |||||||||| |
|
|
| T |
7663104 |
gccacaatctacgcctccacctccaaaaaaacccctgctgctccaaatcaacagagaacaagtctgccatagacatgagcttattctctattaactcaaa |
7663005 |
T |
|
| Q |
149 |
cagcctacgaaaacggacactaaaaggaacatcccctaa |
187 |
Q |
| |
|
|| |||||||||||||||| || |||||||||||||| |
|
|
| T |
7663004 |
caatctacgaaaacggacacagaacggaacatcccctaa |
7662966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 49 - 196
Target Start/End: Original strand, 2631673 - 2631820
Alignment:
| Q |
49 |
gccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaagtctgccacagacataaacttattctctgttaactcaaa |
148 |
Q |
| |
|
|||| |||||||||||||||||||||| | |||||| |||||||||||||||| | |||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
2631673 |
gccataacctacgtctccacctccacacctccccccaccgctccgaatcaacagagagcaagtcggccacagacatagacttattctctgttaactcaaa |
2631772 |
T |
|
| Q |
149 |
cagcctacgaaaacggacactaaaaggaacatcccctaaccacctatc |
196 |
Q |
| |
|
|| || | ||| || |||| || |||| | ||||||| ||||||||| |
|
|
| T |
2631773 |
caaccgcctaaaccgcacacaaagaggagcctcccctatccacctatc |
2631820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 49 - 196
Target Start/End: Original strand, 20675297 - 20675444
Alignment:
| Q |
49 |
gccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaagtctgccacagacataaacttattctctgttaactcaaa |
148 |
Q |
| |
|
|||| |||||||||||||||||||||| | |||||| |||||||||||||| | | |||||| ||||| || ||| |||||||||||||||||||||| |
|
|
| T |
20675297 |
gccataacctacgtctccacctccacacctccccccaccgctccgaatcaacaaagagcaagtcggccacggatatagacttattctctgttaactcaaa |
20675396 |
T |
|
| Q |
149 |
cagcctacgaaaacggacactaaaaggaacatcccctaaccacctatc |
196 |
Q |
| |
|
|| || | ||| || |||| || |||| | ||||||||||||||||| |
|
|
| T |
20675397 |
caaccgcctaaaccgcacacaaagaggagcctcccctaaccacctatc |
20675444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 55 - 150
Target Start/End: Complemental strand, 23873335 - 23873240
Alignment:
| Q |
55 |
acctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaagtctgccacagacataaacttattctctgttaactcaaaca |
150 |
Q |
| |
|
||||||||||||||||||||| | |||||| |||||||||||||||| | |||||| || || |||||| |||||||||||||||||||||||| |
|
|
| T |
23873335 |
acctacgtctccacctccacacctccccccaccgctccgaatcaacagagagcaagtcggcaacggacatagacttattctctgttaactcaaaca |
23873240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 57 - 150
Target Start/End: Original strand, 55298903 - 55298996
Alignment:
| Q |
57 |
ctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaagtctgccacagacataaacttattctctgttaactcaaaca |
150 |
Q |
| |
|
||||||||||||||||||| | |||||| |||||||||||||||| | |||||| || || |||||| |||||||||||||||||||||||| |
|
|
| T |
55298903 |
ctacgtctccacctccacacctccccccaccgctccgaatcaacagagagcaagtcggcaacggacatagacttattctctgttaactcaaaca |
55298996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 49 - 196
Target Start/End: Complemental strand, 8486846 - 8486699
Alignment:
| Q |
49 |
gccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaagtctgccacagacataaacttattctctgttaactcaaa |
148 |
Q |
| |
|
|||| |||||||||||||||||||||| | |||||| | |||||||||||||| | |||||| | || |||||| |||||||||||||||||||||| |
|
|
| T |
8486846 |
gccataacctacgtctccacctccacacctccccccaccggtccgaatcaacagagagcaagtcgacgacggacatagacttattctctgttaactcaaa |
8486747 |
T |
|
| Q |
149 |
cagcctacgaaaacggacactaaaaggaacatcccctaaccacctatc |
196 |
Q |
| |
|
|| || | ||| || |||| || |||| | ||||||| ||||||||| |
|
|
| T |
8486746 |
caaccgcctaaaccgcacacaaagaggagcctcccctatccacctatc |
8486699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 3129892 - 3129860
Alignment:
| Q |
1 |
catcaagaagtaaagccccacactccgctaaca |
33 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
3129892 |
catcaagaagtaaagccctacactccgctaaca |
3129860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 134767 - 134567
Alignment:
| Q |
1 |
catcaagaagtaaagccccacactccgctaacaagnnnnnnnnnnacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaac |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
134767 |
catcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaat |
134668 |
T |
|
| Q |
101 |
agataacaagtctgccacagacataaacttattctctgttaactcaaacagcctacgaaaacggacactaaaaggaacatcccctaaccacctatccaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
134667 |
agataacaagtctgccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaac |
134568 |
T |
|
| Q |
201 |
c |
201 |
Q |
| |
|
| |
|
|
| T |
134567 |
c |
134567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 312594 - 312394
Alignment:
| Q |
1 |
catcaagaagtaaagccccacactccgctaacaagnnnnnnnnnnacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaac |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
312594 |
catcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaat |
312495 |
T |
|
| Q |
101 |
agataacaagtctgccacagacataaacttattctctgttaactcaaacagcctacgaaaacggacactaaaaggaacatcccctaaccacctatccaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
312494 |
agataacaagtctgccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaac |
312395 |
T |
|
| Q |
201 |
c |
201 |
Q |
| |
|
| |
|
|
| T |
312394 |
c |
312394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 328048 - 327848
Alignment:
| Q |
1 |
catcaagaagtaaagccccacactccgctaacaagnnnnnnnnnnacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaac |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
328048 |
catcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaat |
327949 |
T |
|
| Q |
101 |
agataacaagtctgccacagacataaacttattctctgttaactcaaacagcctacgaaaacggacactaaaaggaacatcccctaaccacctatccaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
327948 |
agataacaagtctgccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaac |
327849 |
T |
|
| Q |
201 |
c |
201 |
Q |
| |
|
| |
|
|
| T |
327848 |
c |
327848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 10486833 - 10486609
Alignment:
| Q |
1 |
catcaagaagtaaagccccacactccgctaacaagnnnnnnnnnnacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaac |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| | || ||||||||||||||||||||||||||| ||| |||| ||||||||||||||| |
|
|
| T |
10486833 |
catcaagaagtaaagccctacactccgctaacatgtcctcctcccactgccacaacctacgtctccacctccacataaccccccgctgctccgaatcaac |
10486734 |
T |
|
| Q |
101 |
agataacaagtctgccacagacataaacttattctctgttaactcaaacagcctacgaaaacggacactaaaaggaacatcccctaaccacctatccaac |
200 |
Q |
| |
|
||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
10486733 |
agagaacaagtctgccacagacatgaacttattctatgttaactcaaacagcctacgaaaacggacacaaaaaggaagatcccctaaccacctatccaac |
10486634 |
T |
|
| Q |
201 |
cnnnnnnncgtatcagctccatctc |
225 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
10486633 |
caaaacaacgtatcagctccatctc |
10486609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 49 - 196
Target Start/End: Original strand, 34481222 - 34481369
Alignment:
| Q |
49 |
gccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaagtctgccacagacataaacttattctctgttaactcaaa |
148 |
Q |
| |
|
|||| |||||||||||||||||||||| | |||||| |||||||||||||||| | ||| | ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34481222 |
gccataacctacgtctccacctccacacttccccccaccgctccgaatcaacagagagcaaatatgccacagacatagacttattctctgttaactcaaa |
34481321 |
T |
|
| Q |
149 |
cagcctacgaaaacggacactaaaaggaacatcccctaaccacctatc |
196 |
Q |
| |
|
|| || || ||| | |||| || |||||| ||||||||||||||||| |
|
|
| T |
34481322 |
caaccgactaaacctcacacaaagaggaacctcccctaaccacctatc |
34481369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 4e-59; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 54 - 201
Target Start/End: Original strand, 21528445 - 21528592
Alignment:
| Q |
54 |
aacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaagtctgccacagacataaacttattctctgttaactcaaacagcc |
153 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||| ||||||||||||||||| ||||||||| | |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
21528445 |
aacctacgtctccacctccacataaccccccattgctccgaatcaacagagaacaagtctccaacagacatgaacttattctctgttaactcaaacagcc |
21528544 |
T |
|
| Q |
154 |
tacgaaaacggacactaaaaggaacatcccctaaccacctatccaacc |
201 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
21528545 |
tacgaaaacggacacaaaaaggaacatcccctaaccacctatccaacc |
21528592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 49 - 196
Target Start/End: Original strand, 36306059 - 36306206
Alignment:
| Q |
49 |
gccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaagtctgccacagacataaacttattctctgttaactcaaa |
148 |
Q |
| |
|
||||||| ||||| ||||||||||| | ||| ||| ||||||| |||||||||| ||||||||||||||| |||| | ||||||||| ||||||||||| |
|
|
| T |
36306059 |
gccacaatctacgcctccacctccaaacaaccccctgctgctccaaatcaacagagaacaagtctgccacatacatgagcttattctccgttaactcaaa |
36306158 |
T |
|
| Q |
149 |
cagcctacgaaaacggacactaaaaggaacatcccctaaccacctatc |
196 |
Q |
| |
|
||| ||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
36306159 |
cagtctacgaaaaaggacacagaaaggaacatcccctaaccacctatc |
36306206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 49 - 196
Target Start/End: Original strand, 37530841 - 37530988
Alignment:
| Q |
49 |
gccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaagtctgccacagacataaacttattctctgttaactcaaa |
148 |
Q |
| |
|
|||| |||||||||||||||||||||| | |||||| |||||||||||||||| | ||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
37530841 |
gccataacctacgtctccacctccacacttccccccaccgctccgaatcaacagagagcaagtctgccacatacatagtcttattctctgttaactcaaa |
37530940 |
T |
|
| Q |
149 |
cagcctacgaaaacggacactaaaaggaacatcccctaaccacctatc |
196 |
Q |
| |
|
|| || || || | |||| || |||||| ||||||||||||||||| |
|
|
| T |
37530941 |
caaccgactaagtctcacacaaagaggaacctcccctaaccacctatc |
37530988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 150
Target Start/End: Complemental strand, 32353162 - 32353061
Alignment:
| Q |
49 |
gccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaagtctgccacagacataaacttattctctgttaactcaaa |
148 |
Q |
| |
|
|||| |||||||||||||||||||||| | |||||| |||||||||||||||| | |||||| ||||| |||||| |||||||||||||||||||||| |
|
|
| T |
32353162 |
gccataacctacgtctccacctccacacctccccccaccgctccgaatcaacagagagcaagtcggccacggacatagacttattctctgttaactcaaa |
32353063 |
T |
|
| Q |
149 |
ca |
150 |
Q |
| |
|
|| |
|
|
| T |
32353062 |
ca |
32353061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 54 - 196
Target Start/End: Complemental strand, 48073291 - 48073149
Alignment:
| Q |
54 |
aacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaagtctgccacagacataaacttattctctgttaactcaaacagcc |
153 |
Q |
| |
|
|||||||||||||||||||||| | |||||| |||||||||||||||| | |||||| || || |||||| |||||||||||||||||||||||| || |
|
|
| T |
48073291 |
aacctacgtctccacctccacacctccccccaccgctccgaatcaacagagagcaagtcggcaacggacatagacttattctctgttaactcaaacaacc |
48073192 |
T |
|
| Q |
154 |
tacgaaaacggacactaaaaggaacatcccctaaccacctatc |
196 |
Q |
| |
|
| ||| || |||| || |||| | ||||||| ||||||||| |
|
|
| T |
48073191 |
gcctaaaccgcacacaaagaggagcctcccctatccacctatc |
48073149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 48265631 - 48265548
Alignment:
| Q |
1 |
catcaagaagtaaagccccacactccgctaacaagnnnnnnnnnnacagccacaacctacgtctccacctccacaaaacgcccc |
84 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
48265631 |
catcaagaagtaaagccctacactccgctaacaactcctcctcccactgccacaacctacgtctccacctccacataacccccc |
48265548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 4e-56; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 49731845 - 49731645
Alignment:
| Q |
1 |
catcaagaagtaaagccccacactccgctaacaagnnnnnnnnnnacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaac |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||| || ||||||| ||||||||||||||||||| ||| |||| |||||||| |||||| |
|
|
| T |
49731845 |
catcaagaagtaaagccctacactccgccaacaactcctcctcccactgccacaaactacgtctccacctccacataaccccccgctgctccggatcaac |
49731746 |
T |
|
| Q |
101 |
agataacaagtctgccacagacataaacttattctctgttaactcaaacagcctacgaaaacggacactaaaaggaacatcccctaaccacctatccaac |
200 |
Q |
| |
|
||| ||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
49731745 |
agagaacaagtctgccacatacatgaacttattctctgttaactcaaacagtctacgaaaacggacacaaaaaggaacatcccctaaccacctatcaaac |
49731646 |
T |
|
| Q |
201 |
c |
201 |
Q |
| |
|
| |
|
|
| T |
49731645 |
c |
49731645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 49 - 201
Target Start/End: Complemental strand, 30167209 - 30167057
Alignment:
| Q |
49 |
gccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaagtctgccacagacataaacttattctctgttaactcaaa |
148 |
Q |
| |
|
||||||| ||||| ||||||||||| ||||| ||| ||||||| ||||||||| ||||||||||||||| |||| | ||||||||||||||||||||| |
|
|
| T |
30167209 |
gccacaatctacgcctccacctccaaaaaacaccctgctgctccagatcaacagagaacaagtctgccacaaacatgagcttattctctgttaactcaaa |
30167110 |
T |
|
| Q |
149 |
cagcctacgaaaacggacactaaaaggaacatcccctaaccacctatccaacc |
201 |
Q |
| |
|
|| |||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
30167109 |
caatctacgaaaacggacacagaacggaacatcccctaaccacctatccaacc |
30167057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 49 - 196
Target Start/End: Complemental strand, 2813365 - 2813218
Alignment:
| Q |
49 |
gccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaagtctgccacagacataaacttattctctgttaactcaaa |
148 |
Q |
| |
|
|||| |||||||||||||||||||||| | |||||| |||||||||||||||| | |||||| || || |||||| |||||||||||||||||||||| |
|
|
| T |
2813365 |
gccataacctacgtctccacctccacacctccccccaccgctccgaatcaacagagagcaagtcggcaacggacatagacttattctctgttaactcaaa |
2813266 |
T |
|
| Q |
149 |
cagcctacgaaaacggacactaaaaggaacatcccctaaccacctatc |
196 |
Q |
| |
|
|| || | ||| || |||| || |||| | ||||||| ||||||||| |
|
|
| T |
2813265 |
caaccgcctaaaccgcacacaaagaggagcctcccctatccacctatc |
2813218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 49 - 196
Target Start/End: Original strand, 29309683 - 29309830
Alignment:
| Q |
49 |
gccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaagtctgccacagacataaacttattctctgttaactcaaa |
148 |
Q |
| |
|
|||| |||||||||||||||||||||| | |||||| |||||||||| ||||| | |||||| ||||| |||||| |||||||||||||||||||||| |
|
|
| T |
29309683 |
gccataacctacgtctccacctccacacctccccccaccgctccgaatcgacagagagcaagtcggccacggacatagacttattctctgttaactcaaa |
29309782 |
T |
|
| Q |
149 |
cagcctacgaaaacggacactaaaaggaacatcccctaaccacctatc |
196 |
Q |
| |
|
|| || | ||| || |||| || |||| | ||||||| ||||||||| |
|
|
| T |
29309783 |
caaccgcctaaaccgcacacaaagaggagcctcccctatccacctatc |
29309830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 54 - 196
Target Start/End: Complemental strand, 6176338 - 6176196
Alignment:
| Q |
54 |
aacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaagtctgccacagacataaacttattctctgttaactcaaacagcc |
153 |
Q |
| |
|
|||||||||||||||||||||| | |||||| |||||||||||||||| | |||||| || || |||||| ||||||||||| |||||||||||| || |
|
|
| T |
6176338 |
aacctacgtctccacctccacacctccccccaccgctccgaatcaacagagagcaagtcggcgacggacatagacttattctctattaactcaaacaacc |
6176239 |
T |
|
| Q |
154 |
tacgaaaacggacactaaaaggaacatcccctaaccacctatc |
196 |
Q |
| |
|
| ||| || |||| || |||| | ||||||| ||||||||| |
|
|
| T |
6176238 |
gtctaaaccgcacacaaagaggagcctcccctatccacctatc |
6176196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 124
Target Start/End: Original strand, 9379372 - 9379447
Alignment:
| Q |
49 |
gccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaagtctgccacagacat |
124 |
Q |
| |
|
|||| ||||| || ||||||||||||||| | ||||||||||| ||||||||| | ||||||| ||||||| |||| |
|
|
| T |
9379372 |
gccataacctgcgcctccacctccacaaatccccccactgctctgaatcaacatagaacaagtttgccacatacat |
9379447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 49 - 196
Target Start/End: Original strand, 7452627 - 7452774
Alignment:
| Q |
49 |
gccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaagtctgccacagacataaacttattctctgttaactcaaa |
148 |
Q |
| |
|
||||||| ||||| ||||||||||| | ||| ||| ||||||| |||||||||| |||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
7452627 |
gccacaatctacgcctccacctccaaacaaccccctgctgctccaaatcaacagagaacaagtctgccacagacataagcttattctccgttaactcaaa |
7452726 |
T |
|
| Q |
149 |
cagcctacgaaaacggacactaaaaggaacatcccctaaccacctatc |
196 |
Q |
| |
|
||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7452727 |
cagtctacgaaaacggacacagaaaggaacatcccctaaccacctatc |
7452774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 49 - 196
Target Start/End: Complemental strand, 16420875 - 16420728
Alignment:
| Q |
49 |
gccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaagtctgccacagacataaacttattctctgttaactcaaa |
148 |
Q |
| |
|
|||| |||||||||||||||||||||| | |||||| |||||||||||||||| | |||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
16420875 |
gccataacctacgtctccacctccacacctccccccaccgctccgaatcaacagagagcaagtcggccacagacatagacttattctctgttaactcaaa |
16420776 |
T |
|
| Q |
149 |
cagcctacgaaaacggacactaaaaggaacatcccctaaccacctatc |
196 |
Q |
| |
|
|| || | ||| || |||| || |||| | ||||||| ||||||||| |
|
|
| T |
16420775 |
caaccgcctaaaccgcacacaaagaggagcctcccctatccacctatc |
16420728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 15653618 - 15653418
Alignment:
| Q |
1 |
catcaagaagtaaagccccacactccgctaacaagnnnnnnnnnnacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaac |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| || ||||||| ||||| ||||||||||| ||||| ||| ||||||| ||||||| |
|
|
| T |
15653618 |
catcaagaagtaaagccctacactccgctaacatctcctcctcccactgccacaatctacgcctccacctccagaaaaccccctgctgctccaaatcaac |
15653519 |
T |
|
| Q |
101 |
agataacaagtctgccacagacataaacttattctctgttaactcaaacagcctacgaaaacggacactaaaaggaacatcccctaaccacctatccaac |
200 |
Q |
| |
|
||| ||||||||||||| |||||| | ||||||||| |||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
15653518 |
agagaacaagtctgccatagacatgagcttattctccgttaactcaaacagtctacgaaaacgggcacaaaaaggaacatcccctaaccacctatcaaac |
15653419 |
T |
|
| Q |
201 |
c |
201 |
Q |
| |
|
| |
|
|
| T |
15653418 |
c |
15653418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 49 - 201
Target Start/End: Original strand, 46623968 - 46624120
Alignment:
| Q |
49 |
gccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaagtctgccacagacataaacttattctctgttaactcaaa |
148 |
Q |
| |
|
||||||| ||||| ||||||||||| |||| ||| ||||||| |||||||||| |||||||||||||||||||| | ||||||||| ||||||||||| |
|
|
| T |
46623968 |
gccacaaactacgcctccacctccaaaaaaatccctgctgctccaaatcaacagagaacaagtctgccacagacatgagcttattctccgttaactcaaa |
46624067 |
T |
|
| Q |
149 |
cagcctacgaaaacggacactaaaaggaacatcccctaaccacctatccaacc |
201 |
Q |
| |
|
||| || ||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
46624068 |
cagtctgcgaaaacggacacagaaaggaacatcccctaaccacctatcaaacc |
46624120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 57 - 196
Target Start/End: Original strand, 13440336 - 13440475
Alignment:
| Q |
57 |
ctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaagtctgccacagacataaacttattctctgttaactcaaacagcctac |
156 |
Q |
| |
|
||||||||||||||||||| | |||||| |||||||||||||||| | |||||| || || |||||| |||||||||||||||||||||||| || | |
|
|
| T |
13440336 |
ctacgtctccacctccacacctccccccaccgctccgaatcaacagagagcaagtcggcaacggacatagacttattctctgttaactcaaacaaccgcc |
13440435 |
T |
|
| Q |
157 |
gaaaacggacactaaaaggaacatcccctaaccacctatc |
196 |
Q |
| |
|
||| || |||| || |||| | ||||||| ||||||||| |
|
|
| T |
13440436 |
taaaccgcacacaaagaggagcctcccctatccacctatc |
13440475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 196
Target Start/End: Complemental strand, 12378593 - 12378446
Alignment:
| Q |
49 |
gccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaagtctgccacagacataaacttattctctgttaactcaaa |
148 |
Q |
| |
|
|||||||||| || |||| |||| ||||| | |||||| ||| ||| | |||| | ||||| | |||||||||||| | ||||||||| |||||||||| |
|
|
| T |
12378593 |
gccacaacctgcgcctccgcctcaacaaatccccccaccgcttcgacttaacaaagaacaaatttgccacagacatgatcttattctccattaactcaaa |
12378494 |
T |
|
| Q |
149 |
cagcctacgaaaacggacactaaaaggaacatcccctaaccacctatc |
196 |
Q |
| |
|
||| ||| || | || ||| | |||||||||||||| ||||||||| |
|
|
| T |
12378493 |
cagtctatgataccgctcacagagaggaacatcccctatccacctatc |
12378446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 52 - 201
Target Start/End: Original strand, 45421797 - 45421947
Alignment:
| Q |
52 |
acaacctacgtctccacctccacaaaacgcccca-ctgctccgaatcaacagataacaagtctgccacagacataaacttattctctgttaactcaaaca |
150 |
Q |
| |
|
|||| ||||| ||||||||||| |||| |||| ||||||| ||||||||| ||||||||||||||| |||| | ||||||||||||||||||||||| |
|
|
| T |
45421797 |
acaatctacgcctccacctccaaaaaaaacccctgctgctccagatcaacagagaacaagtctgccacatacatgagcttattctctgttaactcaaaca |
45421896 |
T |
|
| Q |
151 |
gcctacgaaaacggacactaaaaggaacatcccctaaccacctatccaacc |
201 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
45421897 |
atctacgaaaacggacacagaacggaacatcccctaaccacctatccaacc |
45421947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 49 - 201
Target Start/End: Original strand, 13550399 - 13550551
Alignment:
| Q |
49 |
gccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaagtctgccacagacataaacttattctctgttaactcaaa |
148 |
Q |
| |
|
|||| |||||||||||||||||||||| | | ||||||||||||||||||||||| | |||||| ||||| | ||| |||||||||||||||||||||| |
|
|
| T |
13550399 |
gccataacctacgtctccacctccacacatccccccactgctccgaatcaacagaaagcaagtccgccacgaatatagacttattctctgttaactcaaa |
13550498 |
T |
|
| Q |
149 |
cagcctacgaaaacggacactaaaaggaacatcccctaaccacctatccaacc |
201 |
Q |
| |
|
|| || || ||| | |||| || |||| | ||||||| ||||||||| |||| |
|
|
| T |
13550499 |
caaccgactaaacctcacacgaagaggagcctcccctatccacctatcgaacc |
13550551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 49 - 196
Target Start/End: Complemental strand, 26894477 - 26894330
Alignment:
| Q |
49 |
gccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaagtctgccacagacataaacttattctctgttaactcaaa |
148 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||| |||||||| ||||||| | |||||| | ||||||||| |||||||||||||||||||||| |
|
|
| T |
26894477 |
gccataacctacgtctccacctccacaccttcccccaccgctccgaagcaacagagagcaagtcggtgacagacatagacttattctctgttaactcaaa |
26894378 |
T |
|
| Q |
149 |
cagcctacgaaaacggacactaaaaggaacatcccctaaccacctatc |
196 |
Q |
| |
|
|| || | ||| || |||| || |||| | ||||||| ||||||||| |
|
|
| T |
26894377 |
caaccgcctaaaccgcacacaaagaggagcctcccctatccacctatc |
26894330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 49 - 196
Target Start/End: Complemental strand, 26899916 - 26899769
Alignment:
| Q |
49 |
gccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaagtctgccacagacataaacttattctctgttaactcaaa |
148 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||| |||||||| ||||||| | |||||| | ||||||||| |||||||||||||||||||||| |
|
|
| T |
26899916 |
gccataacctacgtctccacctccacaccttcccccaccgctccgaagcaacagagagcaagtcggtgacagacatagacttattctctgttaactcaaa |
26899817 |
T |
|
| Q |
149 |
cagcctacgaaaacggacactaaaaggaacatcccctaaccacctatc |
196 |
Q |
| |
|
|| || | ||| || |||| || |||| | ||||||| ||||||||| |
|
|
| T |
26899816 |
caaccgcctaaaccgcacacaaagaggagcctcccctatccacctatc |
26899769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 49 - 150
Target Start/End: Original strand, 43627774 - 43627875
Alignment:
| Q |
49 |
gccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaagtctgccacagacataaacttattctctgttaactcaaa |
148 |
Q |
| |
|
|||| |||||||||||||||||||||| | |||||| ||||||||||| ||| | |||||| ||||| ||||| |||||||||||||||||||||| |
|
|
| T |
43627774 |
gccataacctacgtctccacctccacacctccccccacctctccgaatcaatagagagcaagtcggccacgaacatagacttattctctgttaactcaaa |
43627873 |
T |
|
| Q |
149 |
ca |
150 |
Q |
| |
|
|| |
|
|
| T |
43627874 |
ca |
43627875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 81 - 201
Target Start/End: Original strand, 13550884 - 13551004
Alignment:
| Q |
81 |
ccccactgctccgaatcaacagataacaagtctgccacagacataaacttattctctgttaactcaaacagcctacgaaaacggacactaaaaggaacat |
180 |
Q |
| |
|
||||||||||||||||||||||| | |||||| ||||| | ||| |||||||||||||||||||||||| || || ||| | |||| || |||| | | |
|
|
| T |
13550884 |
ccccactgctccgaatcaacagaaagcaagtccgccacgaatatagacttattctctgttaactcaaacaaccgactaaacctcacacgaagaggagcct |
13550983 |
T |
|
| Q |
181 |
cccctaaccacctatccaacc |
201 |
Q |
| |
|
|||||| ||||||||| |||| |
|
|
| T |
13550984 |
cccctatccacctatcgaacc |
13551004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0131 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0131
Description:
Target: scaffold0131; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 126 - 201
Target Start/End: Complemental strand, 4337 - 4262
Alignment:
| Q |
126 |
aacttattctctgttaactcaaacagcctacgaaaacggacactaaaaggaacatcccctaaccacctatccaacc |
201 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4337 |
aacttattctctattaactcaaacagcctacgaaaacggacacaaaaaggaacatcccctaaccacctatccaacc |
4262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0418 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0418
Description:
Target: scaffold0418; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 49 - 187
Target Start/End: Original strand, 7950 - 8088
Alignment:
| Q |
49 |
gccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaagtctgccacagacataaacttattctctgttaactcaaa |
148 |
Q |
| |
|
||||||| ||||| ||||||||||| |||| ||| ||||||| |||||||||| ||||||||||||| |||||| | |||||||||| |||||||||| |
|
|
| T |
7950 |
gccacaatctacgcctccacctccaaaaaaacccctgctgctccaaatcaacagagaacaagtctgccatagacatgagcttattctctattaactcaaa |
8049 |
T |
|
| Q |
149 |
cagcctacgaaaacggacactaaaaggaacatcccctaa |
187 |
Q |
| |
|
|| |||||||||||||||| || |||||||||||||| |
|
|
| T |
8050 |
caatctacgaaaacggacacagaacggaacatcccctaa |
8088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 150
Target Start/End: Original strand, 25318129 - 25318230
Alignment:
| Q |
49 |
gccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaagtctgccacagacataaacttattctctgttaactcaaa |
148 |
Q |
| |
|
|||| ||||||||| |||||||||||||| | |||||| ||| ||||||||||||| |||||| ||||| |||||||||||||||| |||||||||||| |
|
|
| T |
25318129 |
gccataacctacgtatccacctccacaaatccccccaccgctttgaatcaacagatagcaagtccgccacggacataaacttattctttgttaactcaaa |
25318228 |
T |
|
| Q |
149 |
ca |
150 |
Q |
| |
|
|| |
|
|
| T |
25318229 |
ca |
25318230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 150
Target Start/End: Original strand, 26205623 - 26205724
Alignment:
| Q |
49 |
gccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaagtctgccacagacataaacttattctctgttaactcaaa |
148 |
Q |
| |
|
|||| ||||||||| |||||||||||||| | |||||| ||| ||||||||||||| |||||| ||||| |||||||||||||||| |||||||||||| |
|
|
| T |
26205623 |
gccataacctacgtatccacctccacaaatccccccaccgctttgaatcaacagatagcaagtccgccacggacataaacttattctttgttaactcaaa |
26205722 |
T |
|
| Q |
149 |
ca |
150 |
Q |
| |
|
|| |
|
|
| T |
26205723 |
ca |
26205724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 49 - 196
Target Start/End: Complemental strand, 23347332 - 23347185
Alignment:
| Q |
49 |
gccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaagtctgccacagacataaacttattctctgttaactcaaa |
148 |
Q |
| |
|
|||| |||||||||||||||||||||| | |||||| |||||||||||||||| | |||||| || || |||||| |||||||||||||||||||||| |
|
|
| T |
23347332 |
gccataacctacgtctccacctccacacctccccccaccgctccgaatcaacagagagcaagtcggcgacggacatagacttattctctgttaactcaaa |
23347233 |
T |
|
| Q |
149 |
cagcctacgaaaacggacactaaaaggaacatcccctaaccacctatc |
196 |
Q |
| |
|
|| || | ||| || |||| || |||| | ||||||| ||||||||| |
|
|
| T |
23347232 |
caaccgcctaaaccgcacacaaagaggagcctcccctatccacctatc |
23347185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 150
Target Start/End: Original strand, 15674100 - 15674205
Alignment:
| Q |
49 |
gccacaacctacgtctccacctccacaaaac----gccccactgctccgaatcaacagataacaagtctgccacagacataaacttattctctgttaact |
144 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||| |||| ||||||||||| | ||||| |||||||||||| |||||||||| ||||||| |
|
|
| T |
15674100 |
gccacaacctacgtctccacctccacacctccccggccccaacgctctgaatcaacagagagtaagtcggccacagacatagacttattctccgttaact |
15674199 |
T |
|
| Q |
145 |
caaaca |
150 |
Q |
| |
|
|||||| |
|
|
| T |
15674200 |
caaaca |
15674205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 1683267 - 1683299
Alignment:
| Q |
1 |
catcaagaagtaaagccccacactccgctaaca |
33 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
1683267 |
catcaagaagtaaagccctacactccgctaaca |
1683299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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