View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_244 (Length: 233)
Name: NF11293A_low_244
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_244 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 39081886 - 39082101
Alignment:
| Q |
9 |
aataagtagctcaactgcttatattttcatttattcaatagatttctatcttacttaccatcatcgatatatacattacatttaagtagcaaagatatat |
108 |
Q |
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| T |
39081886 |
aataagtagctcaactgcttatattttcatttattcaatagatttctatcttacttaccatcatcgatat--acattacatttaaatagcaaagatatat |
39081983 |
T |
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| Q |
109 |
taagaattgtaactgggacgaagttctcgaacatattactttagtagaagcttttaaatacaaaaatatggaacaaactagtacaaacaagtagtaacca |
208 |
Q |
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| T |
39081984 |
taagaattgtaactgggaagaagttctcgaacatattactttagtagaagcttttaaatacaacaatatggaacaaactagtacaaacaagtagtaacca |
39082083 |
T |
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| Q |
209 |
aataattgaaacaccaaa |
226 |
Q |
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||||||||||||| |||| |
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| T |
39082084 |
aataattgaaacagcaaa |
39082101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 39086307 - 39086359
Alignment:
| Q |
13 |
agtagctcaactgcttatattttcatttattcaatagatttctatcttactta |
65 |
Q |
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| T |
39086307 |
agtagctcaactgcttatattttcatttattgaatagatttcaatcttactta |
39086359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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