View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_246 (Length: 232)
Name: NF11293A_low_246
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_246 |
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| [»] scaffold0945 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 24546261 - 24546463
Alignment:
| Q |
1 |
agaaagaacattggggagcaccccattaatagaaggtgcatcttgtacgttggtgcaatctgtcgccttgaaagataccacttgcctttccaaatcaaac |
100 |
Q |
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| T |
24546261 |
agaaagaacattggggagcaccccattaatagaaggtgcatcttgtaggttggtgcaatctgtcgccttgaaagataccagttgcttttccaaatcaaac |
24546360 |
T |
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| Q |
101 |
ccaatcaaataattggactgagcatggtttccataaatgccatattcgttactaaaagtgctggtgaatgcaaagcagaaaataccatcttgtaccggaa |
200 |
Q |
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| T |
24546361 |
ccaatcaaataatttgactgagcatggtttccataaatgccatattcgttactaaaagtgctggtgaatgcaaagcaaaaaataccatcttgtaccggaa |
24546460 |
T |
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| Q |
201 |
tga |
203 |
Q |
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||| |
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| T |
24546461 |
tga |
24546463 |
T |
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Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 50 - 147
Target Start/End: Original strand, 24538936 - 24539033
Alignment:
| Q |
50 |
ttggtgcaatctgtcgccttgaaagataccacttgcctttccaaatcaaacccaatcaaataattggactgagcatggtttccataaatgccatattc |
147 |
Q |
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| T |
24538936 |
ttggtgcaatctgttgccttgaaagaaaccacctgcctttccaaatcaaacccaatcaaatagtttgactgggcatagtttccataagtgacatattc |
24539033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0945 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0945
Description:
Target: scaffold0945; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 34 - 203
Target Start/End: Complemental strand, 583 - 414
Alignment:
| Q |
34 |
aggtgcatcttgtacgttggtgcaatctgtcgccttgaaagataccacttgcctttccaaatcaaacccaatcaaataattggactgagcatggtttcca |
133 |
Q |
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| T |
583 |
aggtgcatcttgtaagttggtgcaatctgtggccttgaaagaaaccacttgcttttccaaatcaaacccaatcaaataatttgactgcacatagcttcca |
484 |
T |
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| Q |
134 |
taaatgccatattcgttactaaaagtgctggtgaatgcaaagcagaaaataccatcttgtaccggaatga |
203 |
Q |
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| T |
483 |
taagtgccatattcgttactaaaagagctggtgaatgcaaagcagaaaataccatattgtaccggaatga |
414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 229
Target Start/End: Original strand, 54429702 - 54429732
Alignment:
| Q |
199 |
aatgactcctgagttatcatataacaatagc |
229 |
Q |
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| T |
54429702 |
aatgactcctgagttatcatataacaatagc |
54429732 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 1667880 - 1667944
Alignment:
| Q |
50 |
ttggtgcaatctgtcgccttgaaagataccacttgcctttccaaatcaaacccaatcaaataatt |
114 |
Q |
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| T |
1667880 |
ttggtacaatctgttggcttgaaagagaccacttgtctatccaaatcaaatcctattaaataatt |
1667944 |
T |
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