View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_247 (Length: 231)
Name: NF11293A_low_247
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_247 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 7 - 231
Target Start/End: Complemental strand, 5509622 - 5509398
Alignment:
| Q |
7 |
tatgatattgttatggttgaaaaatccaagctttttcatggattctaaatgggaagacacaaagttcaaacttttatcagaaaaatgtgaaaactttgaa |
106 |
Q |
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| T |
5509622 |
tatgatattgttatggttgaaaaatccaagctttttcatggattctaaatgggaagacacaaagttcaaacttttatcagaaaaatgtgaaaactttgaa |
5509523 |
T |
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| Q |
107 |
cttggtatgagagaaaatgttgagttaacagtttgaagaaactcaatcataggttttaacaatttcaaatcatggttggaagtagctgagttaagggtaa |
206 |
Q |
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| T |
5509522 |
cttggtatgagagaaaatgttgagttaacagtttgaagaaactcaatcataggttttaacattttcaaatcatggttggaagtagctgagttaagggtaa |
5509423 |
T |
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| Q |
207 |
aacagtccaaatcaaaagcaatgga |
231 |
Q |
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| T |
5509422 |
aacagtccaaatcaaaagcaatgga |
5509398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 24 - 231
Target Start/End: Complemental strand, 20432909 - 20432702
Alignment:
| Q |
24 |
tgaaaaatccaagctttttcatggattctaaatgggaagacacaaagttcaaacttttatcagaaaaatgtgaaaactttgaacttggtatgagagaaaa |
123 |
Q |
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| T |
20432909 |
tgaaaaatccaagctttttcatggattctaaatgggaagacacaaagtttgaacctttatcagaaaaatgtgaaaaccttgaacttggtatgagagaaaa |
20432810 |
T |
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| Q |
124 |
tgttgagttaacagtttgaagaaactcaatcataggttttaacaatttcaaatcatggttggaagtagctgagttaagggtaaaacagtccaaatcaaaa |
223 |
Q |
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| T |
20432809 |
tgttgagttaacagtttgaagaaactcaatcataggttttaacattttcaaatcatggttggaagtagctgagttaagggtaaaacagtccaaatcaaaa |
20432710 |
T |
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| Q |
224 |
gcaatgga |
231 |
Q |
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| T |
20432709 |
gcaatgga |
20432702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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