View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_250 (Length: 231)
Name: NF11293A_low_250
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_250 |
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| [»] scaffold1075 (1 HSPs) |
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Alignment Details
Target: scaffold1075 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold1075
Description:
Target: scaffold1075; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 2750 - 2537
Alignment:
| Q |
1 |
agagaccttgaagttatgggcataagatctgac-tttggtgcaatgaaaatggaaaaatttctccgacaatttttactttaactggtaaaagtaagaggg |
99 |
Q |
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| T |
2750 |
agagaccttgaagttatgggcataagatctgacctttggtgcaatgaaaatggaaaaatttctccggcaatttttactttgactggtaaaagtaagaggg |
2651 |
T |
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| Q |
100 |
aatttttaacaattttaaagaatatcacagtgcctgatggttattcaagcaacatttctagatgcattgacttggaagctcttaagttgaaaggaacatt |
199 |
Q |
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| T |
2650 |
attttttaacaattttaaagaatatcacagtgcctgatggttattcaagcaacatttctagatgcattgacttagaagctcttaagttgaaaggaacgtt |
2551 |
T |
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| Q |
200 |
gaagagtcatgatg |
213 |
Q |
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|||||||||||||| |
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| T |
2550 |
gaagagtcatgatg |
2537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 17006347 - 17006560
Alignment:
| Q |
1 |
agagaccttgaagttatgggcataagatctgac-tttggtgcaatgaaaatggaaaaatttctccgacaatttttactttaactggtaaaagtaagaggg |
99 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
17006347 |
agagaccttgaagttatgggcataagatctgacctttggtgcaatgaaaatggaaaaatttctccgacaatttttactttgactggtaaatgtaagaggg |
17006446 |
T |
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| Q |
100 |
aatttttaacaattttaaagaatatcacagtgcctgatggttattcaagcaacatttctagatgcattgacttggaagctcttaagttgaaaggaacatt |
199 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
17006447 |
aatttttaacaattttaaagaatatcacagtgccggatggttattcaagcaacatttctagatgcattgacttggaagctcttaagttgaaaggaatgtt |
17006546 |
T |
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| Q |
200 |
gaagagtcatgatg |
213 |
Q |
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| T |
17006547 |
gaagagtcatgatg |
17006560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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