View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_251 (Length: 231)
Name: NF11293A_low_251
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_251 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 8947195 - 8946988
Alignment:
| Q |
15 |
cactcaccacaatgccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggtttgattgactcaggtgttt |
114 |
Q |
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| T |
8947195 |
cactcaccacaattccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggtttgattgactcaggtgttt |
8947096 |
T |
|
| Q |
115 |
ggcacgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttgcaaataccaacaattcatcatt |
214 |
Q |
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||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
8947095 |
ggcccgagagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttgaaaatagcaacaattcatcatt |
8946996 |
T |
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| Q |
215 |
ttgcaaca |
222 |
Q |
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|||||||| |
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| T |
8946995 |
ttgcaaca |
8946988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 8973299 - 8973507
Alignment:
| Q |
14 |
tcactcaccacaatgccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggtttgattgactcaggtgtt |
113 |
Q |
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|||||||||||||| ||||||||| ||| ||| |||||||||||||||||||| | | ||| ||||||||||| ||||| ||||||| | |||||| |
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| T |
8973299 |
tcactcaccacaattccttggccttaattcatacaaaggggcatggccagcttctgattatggcaaagatgtcattgttggtatgattgataccggtgtt |
8973398 |
T |
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| Q |
114 |
tggcacgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttgcaaataccaacaattcatcat |
213 |
Q |
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| T |
8973399 |
tggccagaaagtgaaagtttcaaagataatgacatgcctcaaattccttcaaaatggaaagggcaattatgtcaatttgaaaataccaacaattcatctt |
8973498 |
T |
|
| Q |
214 |
tttgcaaca |
222 |
Q |
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||||||||| |
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| T |
8973499 |
tttgcaaca |
8973507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 79 - 222
Target Start/End: Original strand, 8961962 - 8962105
Alignment:
| Q |
79 |
aagatgtcattattggtttgattgactcaggtgtttggcacgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaa |
178 |
Q |
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||||||||||| ||||| ||||||| | |||||||||| |||||||||||||| |||||||||||| | |||||||| |||||||||||||||||||| |
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| T |
8961962 |
aagatgtcattgttggtgtgattgataccggtgtttggccagaaagtgaaagtttcaatgataatggatttactaaaattccttcaaaatggaaagggaa |
8962061 |
T |
|
| Q |
179 |
gttatgtcaatttgcaaataccaacaattcatcattttgcaaca |
222 |
Q |
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||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
8962062 |
attatgtcaatttgaaaataccaacaattcatctttttgcaaca |
8962105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 21688346 - 21688169
Alignment:
| Q |
15 |
cactcaccacaatgccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggtttgattgactcaggtgttt |
114 |
Q |
| |
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|||||||| |||| |||||||| ||||||| | ||||||||||||| ||||| | |||||| ||||| ||||| ||||| | || ||| | ||||||| |
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| T |
21688346 |
cactcacctcaatttcttggccttaatccatatagaggggcatggccaacttctgattttggtaaagatatcattgttggtgtaatagacactggtgttt |
21688247 |
T |
|
| Q |
115 |
ggcacgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttg |
192 |
Q |
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||| |||||||||||||||| ||| |||||||||||||||| || |||||||||||||| | ||||||||||||| |
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| T |
21688246 |
ggccagaaagtgaaagttttagagatgatggaatgactaaaataccctcaaaatggaaaggccaattatgtcaatttg |
21688169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 175
Target Start/End: Complemental strand, 34963857 - 34963779
Alignment:
| Q |
97 |
tgattgactcaggtgtttggcacgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagg |
175 |
Q |
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|||||||| |||| ||||||| |||||||| || || || ||| |||||||||||||||| ||||||||||||||||| |
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| T |
34963857 |
tgattgacacaggagtttggccagaaagtgagagcttcaaagatgatggaatgactaaaattccttcaaaatggaaagg |
34963779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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