View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_259 (Length: 230)
Name: NF11293A_low_259
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_259 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 4302284 - 4302063
Alignment:
| Q |
7 |
acaagtgcagttccatttaggatatgaattgaagccttatcaaccaagactactgcatctagaacttctcttataggaatgtgtccatatggggatatct |
106 |
Q |
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| T |
4302284 |
acaagtgcagttccatttaggatatgaattgaagccttatcaaccaagactactgcacctagaacttctctta--ggaatgtgtccatatggtgatatct |
4302187 |
T |
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| Q |
107 |
gtcatgaatttgcttcaaatggtgtaggcttgacaacaaacgcttggaaaatacatcgtctgatgtttttcttgtcccacacaacctacctataatagtt |
206 |
Q |
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| T |
4302186 |
gtcatgaatttgcttcaaatggtgtaggcttgacaacaaacgcttggaaaatacatcgtctggtgtttttcttgtcccacacaacctacctataatagtt |
4302087 |
T |
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| Q |
207 |
gcaaacgaactcacttgccgctgg |
230 |
Q |
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| T |
4302086 |
gcaaacgaactcacttgccgctgg |
4302063 |
T |
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Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 91 - 221
Target Start/End: Original strand, 49100456 - 49100586
Alignment:
| Q |
91 |
ccatatggggatatctgtcatgaatttgcttcaaatggtgtaggcttgacaacaaacgcttggaaaatacatcgtctgatgtttttcttgtcccacacaa |
190 |
Q |
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| T |
49100456 |
ccatatggtgatatctgtcatgaatttgcttcaaatggtataggcttgacaacagacgcttggaaaatgcaacctctggtgtttttcttgtcccgtgcag |
49100555 |
T |
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| Q |
191 |
cctacctataatagttgcaaacgaactcact |
221 |
Q |
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| T |
49100556 |
cctacctataaacgttgcaaacaaactcact |
49100586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 115 - 229
Target Start/End: Original strand, 49112274 - 49112388
Alignment:
| Q |
115 |
tttgcttcaaatggtgtaggcttgacaacaaacgcttggaaaatacatcgtctgatgtttttcttgtcccacacaacctacctataatagttgcaaacga |
214 |
Q |
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| T |
49112274 |
tttgcttcaaacggtttaggcttgacaatagactcttggtaaacacaacctctgatgtttttcttgtcccttctaatctacctataatagttgcaaatga |
49112373 |
T |
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| Q |
215 |
actcacttgccgctg |
229 |
Q |
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| T |
49112374 |
actcacttggcgctg |
49112388 |
T |
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