View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_261 (Length: 229)
Name: NF11293A_low_261
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_261 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 54428776 - 54428986
Alignment:
| Q |
1 |
tcaactctagagtgaagtctatgaaaattccacgagtttatgtatgctatcgagtttgacagtcatggatataaagattgagtcaagnnnnnnntccatc |
100 |
Q |
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| T |
54428776 |
tcaactctagagtgaagtctatgaaaattccacgagtttatgtatgctatcgagtttgacagtcatggatataaagattgagtcaagaaaaaaatccatc |
54428875 |
T |
|
| Q |
101 |
atttgcaatatttatacacactgtggaaaccttaatgagaggtaagcttaaaaatgcagttatattatatagatagataaaatatagaagccaagtgtaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54428876 |
atttgcaatatttatacacactgtggaaaccttaatgagaggtaagcttaaaaatgcagttatattatatagatagataaaatatagaagccaagtgtaa |
54428975 |
T |
|
| Q |
201 |
gttagggatga |
211 |
Q |
| |
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||||||||||| |
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| T |
54428976 |
gttagggatga |
54428986 |
T |
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