View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11293A_low_267 (Length: 229)
Name: NF11293A_low_267
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_267 |
 | |
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| [»] chr2 (14 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0667 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 14)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 9292589 - 9292367
Alignment:
| Q |
7 |
gtaacggcctcctcgccatttccaatagccaaatctgcttcacgcatccttacgcccctaacgaaaccacagtcttgaaccctaacactcataaacatag |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
9292589 |
gtaacggcctcctcgccatttccaatagccaaatctgcttcacgcatccttacgcccctaacgaaatcacagtcttgaaccctaacactcataaacatcg |
9292490 |
T |
|
| Q |
107 |
gattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatcgcgcaggtgtatgcgttcccggcttcggttatgatccatta |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9292489 |
gattatcccttttctccctcttgctatccctaacattctcgagtctgaaaacattgatcgcgccggtgtatgcgttcacggcttcggttatgatccatta |
9292390 |
T |
|
| Q |
207 |
accggcgattacaaactcctcag |
229 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
9292389 |
accggcgattacaaactcctcag |
9292367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 69 - 227
Target Start/End: Original strand, 9283721 - 9283879
Alignment:
| Q |
69 |
gaaaccacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatcgcg |
168 |
Q |
| |
|
|||| |||| ||| |||| ||||||| | ||||||| ||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||| |||| |
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|
| T |
9283721 |
gaaatcacaatctggaacactaacacccgtaaacattggattatcccttttctccctcttcctatccctaacattgtggagtctgaaaacattgaacgcg |
9283820 |
T |
|
| Q |
169 |
caggtgtatgcgttcccggcttcggttatgatccattaaccggcgattacaaactcctc |
227 |
Q |
| |
|
||||||||| ||| ||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
9283821 |
gcggtgtatgcattcacggcttcggttttgatcctttaaccggcgattacaaactcctc |
9283879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 9316689 - 9316467
Alignment:
| Q |
7 |
gtaacggcctcctcgccatttccaatagccaaatctgcttcacgcatccttacgcccctaacgaaaccacagtcttgaaccctaacactcataaacatag |
106 |
Q |
| |
|
|||||||||| ||||||||||||||| | |||||| |||| ||||||||||| | | ||||||| |||| ||| |||||||||||| | ||||||| | |
|
|
| T |
9316689 |
gtaacggccttctcgccatttccaatggtcaaatcgctttcatgcatccttacggcgccaacgaaatcacaatctggaaccctaacacccgtaaacatcg |
9316590 |
T |
|
| Q |
107 |
gattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatcgcgcaggtgtatgcgttcccggcttcggttatgatccatta |
206 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||| ||||| || |||||| ||| ||||||||| ||||||||||| |||||||| | |
|
|
| T |
9316589 |
tattatccctttccttcctcttgctatccctaacattcttgaatctgacaaacccaatcgcggcggtatatgcgttcacggcttcggttttgatccatca |
9316490 |
T |
|
| Q |
207 |
accggcgattacaaactcctcag |
229 |
Q |
| |
|
|| || ||||||||||||||||| |
|
|
| T |
9316489 |
acaggtgattacaaactcctcag |
9316467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 9357841 - 9357622
Alignment:
| Q |
7 |
gtaacggcctcctcgccatttccaatagccaaatctgcttcacgcatccttacgcccctaacgaaaccacagtcttgaaccctaacactcataaacatag |
106 |
Q |
| |
|
||||||||||||||||||| |||||| || ||||| |||| ||||||| ||||| | ||||||| | || ||| ||||| ||||| | ||||||| |
|
|
| T |
9357841 |
gtaacggcctcctcgccatctccaatggcgaaatcgctttcaggcatcctaacgccgccaacgaaatctcaatctggaaccataacatccgtaaacatca |
9357742 |
T |
|
| Q |
107 |
gattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatcgcgcaggtgtatgcgttcccggcttcggttatgatccatta |
206 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||| ||| |||||||| ||| |||||||||||| ||||||||||| |||||| ||| |
|
|
| T |
9357741 |
cattatccctttcctccctcttcctatccctaacattctccgatctttcaacattgacggcg---gtgtatgcgttcacggcttcggttttgatccttta |
9357645 |
T |
|
| Q |
207 |
accggcgattacaaactcctcag |
229 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
9357644 |
accggcgattacaaactcctcag |
9357622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 66 - 229
Target Start/End: Complemental strand, 9329201 - 9329038
Alignment:
| Q |
66 |
aacgaaaccacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatc |
165 |
Q |
| |
|
||||||| |||| ||| |||||||||||| | ||||||| | ||||||||||| || |||||||||||||||||||||||||| ||||| ||||| ||| |
|
|
| T |
9329201 |
aacgaaatcacaatctggaaccctaacacccgtaaacatcgtattatccctttcctacctcttgctatccctaacattcttgaatctgacaacatccatc |
9329102 |
T |
|
| Q |
166 |
gcgcaggtgtatgcgttcccggcttcggttatgatccattaaccggcgattacaaactcctcag |
229 |
Q |
| |
|
|| ||||||||| ||| ||||||| |||||| ||| |||| ||||||||||||||||| |
|
|
| T |
9329101 |
gcttctccttatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcag |
9329038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 68 - 229
Target Start/End: Original strand, 9060665 - 9060826
Alignment:
| Q |
68 |
cgaaaccacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatcgc |
167 |
Q |
| |
|
|||||||||| ||| |||||||||||| | ||| || ||| ||||||||| |||||||| |||||||||||||| || ||||| ||| ||||| |
|
|
| T |
9060665 |
cgaaaccacaatctggaaccctaacacccgcaaagatcggaccatcccttttatccctcttcctatccctaacattgaggactctgacaaccccaatcgc |
9060764 |
T |
|
| Q |
168 |
gcaggtgtatgcgttcccggcttcggttatgatccattaaccggcgattacaaactcctcag |
229 |
Q |
| |
|
| ||| ||||||||| ||||||||||| ||||||||| |||| |||||||||||||||||| |
|
|
| T |
9060765 |
ggcggtatatgcgttcacggcttcggttttgatccattcaccgccgattacaaactcctcag |
9060826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 45 - 145
Target Start/End: Complemental strand, 10353744 - 10353644
Alignment:
| Q |
45 |
ttcacgcatccttacgcccctaacgaaaccacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatccctaacattc |
144 |
Q |
| |
|
|||||||||||| ||||||| ||||||| |||| | | |||||| ||||| | ||| ||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10353744 |
ttcacgcatcctaacgcccccaacgaaatcacaatatggaaccccaacacccgtaagcatcggattatcccttttctccctcttcctatccctaacattc |
10353645 |
T |
|
| Q |
145 |
t |
145 |
Q |
| |
|
| |
|
|
| T |
10353644 |
t |
10353644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 229
Target Start/End: Complemental strand, 9321578 - 9321415
Alignment:
| Q |
66 |
aacgaaaccacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatc |
165 |
Q |
| |
|
||||||| |||| ||| |||||||| ||||| ||| ||| | || |||||||| || |||||| |||||||| ||||| | || || || ||||| ||| |
|
|
| T |
9321578 |
aacgaaatcacaatctggaaccctagcactcgtaagcatcgtatgatccctttcctacctcttcctatccctgacattatggaatccgacaacatcaatc |
9321479 |
T |
|
| Q |
166 |
gc-gcaggtgtatgcgttcccggcttcggttatgatccattaaccggcgattacaaactcctcag |
229 |
Q |
| |
|
|| || | | ||||||||| || ||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
9321478 |
gctgctgct-tatgcgttcatggtttcggttttgatcctttaaccggcgattacaaactcctcag |
9321415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 145
Target Start/End: Complemental strand, 9275106 - 9275044
Alignment:
| Q |
83 |
gaaccctaacactcataaacataggattatcccttttctccctcttgctatccctaacattct |
145 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
9275106 |
gaaccctaacaccggtaaacatcggattatcccttttctccctcttcctatacctaacattct |
9275044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 138
Target Start/End: Complemental strand, 10372460 - 10372391
Alignment:
| Q |
69 |
gaaaccacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatcccta |
138 |
Q |
| |
|
|||| |||| ||| |||||||||||| | |||||||||| |||||||||||||||||||| |||| |||| |
|
|
| T |
10372460 |
gaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta |
10372391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 138
Target Start/End: Complemental strand, 10348405 - 10348312
Alignment:
| Q |
45 |
ttcacgcatccttacgcccctaacgaaaccacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatcccta |
138 |
Q |
| |
|
|||||||||||| || || ||||||| |||| ||| |||||||||||| | ||||||| ||||||||||||||||||||| |||| |||| |
|
|
| T |
10348405 |
ttcacgcatcctaacaacctcaacgaaatcacaatctggaaccctaacacccgtaaacatcacattatcccttttctccctcttcctattccta |
10348312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 8573146 - 8573188
Alignment:
| Q |
185 |
cggcttcggttatgatccattaaccggcgattacaaactcctc |
227 |
Q |
| |
|
||||||||||| ||||| |||||||| |||||||||||||||| |
|
|
| T |
8573146 |
cggcttcggttttgatctattaaccgccgattacaaactcctc |
8573188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 10336337 - 10336283
Alignment:
| Q |
175 |
tatgcgttcccggcttcggttatgatccattaaccggcgattacaaactcctcag |
229 |
Q |
| |
|
||||||||| ||| ||||||| |||| ||||| ||| |||||||||||||||||| |
|
|
| T |
10336337 |
tatgcgttcacggattcggttttgattcattatccgccgattacaaactcctcag |
10336283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 10348284 - 10348230
Alignment:
| Q |
175 |
tatgcgttcccggcttcggttatgatccattaaccggcgattacaaactcctcag |
229 |
Q |
| |
|
||||||||| ||||||||||| ||||| | || |||| ||||||||||||||||| |
|
|
| T |
10348284 |
tatgcgttcacggcttcggttttgatcaaatatccggtgattacaaactcctcag |
10348230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 37463159 - 37462937
Alignment:
| Q |
7 |
gtaacggcctcctcgccatttccaatagccaaatctgcttcacgcatccttacgcccctaacgaaaccacagtcttgaaccctaacactcataaacatag |
106 |
Q |
| |
|
|||||||||||||||| || |||||| |||||||| |||||||||||| ||||| | ||||||| |||| ||| |||||||||||| | ||||||| |
|
|
| T |
37463159 |
gtaacggcctcctcgctatctccaatggccaaatcgctttcacgcatcctaacgccgccaacgaaatcacaatctggaaccctaacacacgtaaacatct |
37463060 |
T |
|
| Q |
107 |
gattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatcgcgcaggtgtatgcgttcccggcttcggttatgatccatta |
206 |
Q |
| |
|
||||||||||||||||||| | || ||||| ||||| | || || | ||| | | |||| | ||||||||| ||||||||||| |||| | ||| |
|
|
| T |
37463059 |
gattatcccttttctccctatgcctgtcccttacattatggaatcaaacaaccctaaccgcggctgcttatgcgttcacggcttcggttttgattcttta |
37462960 |
T |
|
| Q |
207 |
accggcgattacaaactcctcag |
229 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
37462959 |
accggcgattacaaactcctcag |
37462937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 45 - 229
Target Start/End: Complemental strand, 26575496 - 26575312
Alignment:
| Q |
45 |
ttcacgcatccttacgcccctaacgaaaccacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatccctaacattc |
144 |
Q |
| |
|
||||||||||| ||||||| ||||||| | || ||| ||||||| |||| |||| || ||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
26575496 |
ttcacgcatcccaacgcccccaacgaaatcgcaatctggaacccttacaccggtaaatatcggattatcccttttctccctcttcccatccctaacattc |
26575397 |
T |
|
| Q |
145 |
ttgagtctgaaaacattgatcgcgcaggtgtatgcgttcccggcttcggttatgatccattaaccggcgattacaaactcctcag |
229 |
Q |
| |
|
| | ||||| ||| | |||| | | ||||||||| ||||||||||| |||| | ||| |||||||||||||||||||||| |
|
|
| T |
26575396 |
tccaatctgacaaccctaatcgtggctgcttatgcgttcacggcttcggttttgattctttatccggcgattacaaactcctcag |
26575312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0667 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0667
Description:
Target: scaffold0667; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 4976 - 4922
Alignment:
| Q |
175 |
tatgcgttcccggcttcggttatgatccattaaccggcgattacaaactcctcag |
229 |
Q |
| |
|
||||||||| ||||||||||| |||||| |||||||||||||||||| ||||||| |
|
|
| T |
4976 |
tatgcgttcacggcttcggttttgatcctttaaccggcgattacaaaatcctcag |
4922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0667; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 127
Target Start/End: Complemental strand, 5138 - 5018
Alignment:
| Q |
7 |
gtaacggcctcctcgccatttccaatagccaaatctgct-tcacgcatccttacgcccctaacgaaaccacagtcttgaaccctaacactcataaacata |
105 |
Q |
| |
|
||||||||||||||||| ||||||| || ||||| ||| ||| |||||| ||||| | ||||||| |||| ||| ||||||||||| | ||||||| |
|
|
| T |
5138 |
gtaacggcctcctcgccgtttccaacggcgaaatc-gctctcagacatcctaacgccgccaacgaaatcacaatctggaaccctaacatccgtaaacatc |
5040 |
T |
|
| Q |
106 |
ggattatcccttttctccctct |
127 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
5039 |
acattatcccttttctccctct |
5018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 41966362 - 41966414
Alignment:
| Q |
177 |
tgcgttcccggcttcggttatgatccattaaccggcgattacaaactcctcag |
229 |
Q |
| |
|
||||||| ||| ||||||| ||||||||||||| ||||| ||||||||||||| |
|
|
| T |
41966362 |
tgcgttcacggattcggttttgatccattaaccagcgatcacaaactcctcag |
41966414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 29467429 - 29467476
Alignment:
| Q |
177 |
tgcgttcccggcttcggttatgatccattaaccggcgattacaaactc |
224 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
29467429 |
tgcgttcacggcttcggttttgatccattaaccgatgattacaaactc |
29467476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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