View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_271 (Length: 228)
Name: NF11293A_low_271
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_271 |
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| [»] scaffold0029 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 7779527 - 7779728
Alignment:
| Q |
20 |
gattgagaggaattgcagtgctttaattgttctgcccaatgtaatgcccatactaaactatctagaatagtcgggtgttagtcataagagaccggataga |
119 |
Q |
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| T |
7779527 |
gattgagagtgattgtcgtgctttaattgttctgcccaatgtaatgcccatactaaactatctagaatagtcgggtgttagtcataagagaccggataga |
7779626 |
T |
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| Q |
120 |
ttaaaattacaacatgaattttgtttgaatgaattatattaaagcaaggtctcatacatttgatgaaagtcctaacttacgagtacaaaccataagtcgt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
7779627 |
ttaaaattacaacatgaattttgtttgaatgaattatattaaagcacggtctcatacatctgatgaaagtcctaactgacgagtacaaaccataagtcgt |
7779726 |
T |
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| Q |
220 |
at |
221 |
Q |
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|| |
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| T |
7779727 |
at |
7779728 |
T |
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Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 3738271 - 3738171
Alignment:
| Q |
87 |
tagtcgggtgttagtcataagagaccggatagattaaaattacaacatgaattttgtttgaatgaattatattaaagcaaggtctcatacatttgatgaa |
186 |
Q |
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| T |
3738271 |
tagtcggatgttagatataagataccagatacattaaaattacaacatgaattttgtctgaatgaattatattagagcacagtcttatacatctgatgaa |
3738172 |
T |
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| Q |
187 |
a |
187 |
Q |
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| T |
3738171 |
a |
3738171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 104 - 225
Target Start/End: Complemental strand, 33125779 - 33125656
Alignment:
| Q |
104 |
taagagaccggatagattaaaattacaacatgaattttgtttg-aatgaattatattaaagcaaggtctcatacatttgatg-aaagtcctaacttacga |
201 |
Q |
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| T |
33125779 |
taagatactggatatattaaaattacaacatgaattttgtctgaaatgaattatattcaagcacagtctcatacatctgaggaaaaatgctaattgacga |
33125680 |
T |
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| Q |
202 |
gtacaaaccataagtcgtatctga |
225 |
Q |
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| T |
33125679 |
gtacaaaccataagccgtatctga |
33125656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 40845 - 40745
Alignment:
| Q |
87 |
tagtcgggtgttagtcataagagaccggatagattaaaattacaacatgaattttgtttgaa-tgaattatattaaagcaaggtctcatacatttgatga |
185 |
Q |
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||||||||||||| ||||||| || ||||| |||||| |||||||||||||||||| ||| ||||||||||||||||| ||||||||||| |||||| |
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| T |
40845 |
tagtcgggtgttaaacataagatactggatatattaaa-ttacaacatgaattttgtccgaaatgaattatattaaagcacagtctcatacatctgatga |
40747 |
T |
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| Q |
186 |
aa |
187 |
Q |
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|| |
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| T |
40746 |
aa |
40745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 14150435 - 14150395
Alignment:
| Q |
185 |
aaagtcctaacttacgagtacaaaccataagtcgtatctga |
225 |
Q |
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| T |
14150435 |
aaagtactaactgacgagtacaaaccataagttgtatctga |
14150395 |
T |
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