View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11293A_low_276 (Length: 225)

Name: NF11293A_low_276
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11293A_low_276
NF11293A_low_276
[»] chr2 (8 HSPs)
chr2 (5-205)||(2803204-2803404)
chr2 (15-89)||(33561499-33561573)
chr2 (17-89)||(30312825-30312897)
chr2 (12-114)||(13766795-13766899)
chr2 (16-89)||(29873586-29873659)
chr2 (17-58)||(36005930-36005971)
chr2 (5-89)||(2336660-2336744)
chr2 (14-58)||(31468797-31468841)
[»] chr5 (2 HSPs)
chr5 (5-119)||(10351209-10351325)
chr5 (17-89)||(36521946-36522018)
[»] chr6 (4 HSPs)
chr6 (12-89)||(8481962-8482039)
chr6 (22-89)||(5034876-5034943)
chr6 (48-89)||(27226675-27226716)
chr6 (17-89)||(6071168-6071240)
[»] chr4 (4 HSPs)
chr4 (36-114)||(42480533-42480611)
chr4 (12-58)||(22028412-22028458)
chr4 (17-89)||(34544142-34544215)
chr4 (5-81)||(23630348-23630424)
[»] chr1 (3 HSPs)
chr1 (17-89)||(1188638-1188710)
chr1 (12-58)||(32594761-32594807)
chr1 (16-89)||(1187413-1187486)
[»] chr8 (1 HSPs)
chr8 (12-89)||(4154326-4154402)
[»] chr7 (2 HSPs)
chr7 (5-54)||(7192786-7192835)
chr7 (17-58)||(21619095-21619136)
[»] chr3 (2 HSPs)
chr3 (48-89)||(260805-260846)
chr3 (37-114)||(32930698-32930775)


Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 5 - 205
Target Start/End: Original strand, 2803204 - 2803404
Alignment:
Q  5 tgagatggacatcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaataatgtga 104  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2803204 tgagttggacatcacacttttacccaaaacgttaagacattaagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaacaatgtga 2803303  T
Q  105 gacttttaacctacaattgttgccgttggtgttggtatcacattttttcattgccttaggtaagaaacaaagtatatttaagggttatttcttatttgaa 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2803304 gacttttaacctacaattgttgccgttggtgttggtatcacattttttcattgccttaggtaagaaacaaagtatatttaagggttatttcttatttgaa 2803403  T
Q  205 a 205  Q
    |    
T  2803404 a 2803404  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 33561499 - 33561573
Alignment:
Q  15 atcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 89  Q
    |||||||| ||||||||||| |||||||| |||||||||||||| ||||  ||||| | |||| |||||||||||    
T  33561499 atcacactcttacccaaaaccttaagacaatgagtttatgggtcctctcacttataaagtgtttaacctccactt 33561573  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 30312897 - 30312825
Alignment:
Q  17 cacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 89  Q
    |||||||||||||||||| |||||  | | ||||||||||||||||   ||||| | ||||||||||||||||    
T  30312897 cacacttttacccaaaaccttaaggaaataagtttatgggtcatctaagttataaagtgttcaacctccactt 30312825  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 13766899 - 13766795
Alignment:
Q  12 gacatcacacttttacccaaaacgttaagacattgagtttatgggtcatctc--ttttatagaatgttcaacctccacttctttaaataatgtgagactt 109  Q
    |||| |||| ||| || |||||| ||||| ||||||||||||  ||||||||  ||||||| |||  ||||||||||||| | |||| ||||| ||||||    
T  13766899 gacaccacattttaacacaaaaccttaagtcattgagtttattagtcatctcacttttataaaataatcaacctccacttttctaaacaatgttagactt 13766800  T
Q  110 ttaac 114  Q
     ||||    
T  13766799 ctaac 13766795  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 29873586 - 29873659
Alignment:
Q  16 tcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 89  Q
    ||||||| |||| |||||| ||||| || |||||||||| ||| || |  ||||| ||||||||||||||||||    
T  29873586 tcacactcttactcaaaaccttaaggcaatgagtttatgagtcctcccacttataaaatgttcaacctccactt 29873659  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 36005930 - 36005971
Alignment:
Q  17 cacacttttacccaaaacgttaagacattgagtttatgggtc 58  Q
    |||||||||||||||||| ||||| || ||||||||||||||    
T  36005930 cacacttttacccaaaaccttaaggcaatgagtttatgggtc 36005971  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 89
Target Start/End: Complemental strand, 2336744 - 2336660
Alignment:
Q  5 tgagatggacatcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 89  Q
    |||| |||||| ||||  || ||||||||  ||||| |||||| |||||||||| ||||  ||||| | ||||||||||||||||    
T  2336744 tgagttggacaccacatcttaacccaaaatcttaaggcattgaatttatgggtcctctcacttataaagtgttcaacctccactt 2336660  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 31468797 - 31468841
Alignment:
Q  14 catcacacttttacccaaaacgttaagacattgagtttatgggtc 58  Q
    ||||||||| ||||||||||| ||||| || ||||||||||||||    
T  31468797 catcacactcttacccaaaaccttaaggcaatgagtttatgggtc 31468841  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 119
Target Start/End: Original strand, 10351209 - 10351325
Alignment:
Q  5 tgagatggacatcacacttttacccaaaacg--ttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaataatgt 102  Q
    |||||| ||||||||||||||||||||||    |||||||| |||||||||||||||| ||   |||| |||||||||||||| ||| ||||   |||||    
T  10351209 tgagatagacatcacacttttacccaaaaatatttaagacaatgagtttatgggtcatttcacgtataaaatgttcaacctccgcttttttagccaatgt 10351308  T
Q  103 gagacttttaacctaca 119  Q
    ||||||| |||| ||||    
T  10351309 gagacttctaacttaca 10351325  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 36521946 - 36522018
Alignment:
Q  17 cacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 89  Q
    |||||| ||||||||||| ||||| || |  ||||||||||| |||| |||| ||| ||||||||||| ||||    
T  36521946 cacactcttacccaaaaccttaaggcaattggtttatgggtcctctcatttaaagagtgttcaacctcaactt 36522018  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 8482039 - 8481962
Alignment:
Q  12 gacatcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 89  Q
    |||| |||||| ||||||||||  ||||| || |||||||||| |||||||| |||||| | ||||||||||||||||    
T  8482039 gacaccacactcttacccaaaatcttaaggcaatgagtttatgagtcatctcatttataaagtgttcaacctccactt 8481962  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 5034876 - 5034943
Alignment:
Q  22 ttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 89  Q
    ||||| ||||||| |||| |||||||||| ||||||||||||  ||||| | || |||||||||||||    
T  5034876 ttttatccaaaaccttaaaacattgagttgatgggtcatctcacttataaagtggtcaacctccactt 5034943  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 27226675 - 27226716
Alignment:
Q  48 gtttatgggtcatctcttttatagaatgttcaacctccactt 89  Q
    |||||||||||||||| |||||| |||| |||||||||||||    
T  27226675 gtttatgggtcatctcatttataaaatgatcaacctccactt 27226716  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 6071240 - 6071168
Alignment:
Q  17 cacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 89  Q
    |||||| ||| ||||||  ||||| || ||||||||||| |||||||  ||||| | ||||||||||||||||    
T  6071240 cacactcttatccaaaatcttaaggcaatgagtttatggatcatctcacttataaagtgttcaacctccactt 6071168  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 114
Target Start/End: Complemental strand, 42480611 - 42480533
Alignment:
Q  36 ttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaataatgtgagacttttaac 114  Q
    ||||||||| |||||||||| |||||||  ||| | | |||||||||||||||| || ||||| | |||||||||||||    
T  42480611 ttaagacatcgagtttatggatcatctcacttacatattgttcaacctccactttttcaaatagtatgagacttttaac 42480533  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 22028412 - 22028458
Alignment:
Q  12 gacatcacacttttacccaaaacgttaagacattgagtttatgggtc 58  Q
    |||| |||||| ||||||||||| |||||||| ||||||||||||||    
T  22028412 gacaccacactcttacccaaaacattaagacaatgagtttatgggtc 22028458  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 34544215 - 34544142
Alignment:
Q  17 cacacttttacccaaaa-cgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 89  Q
    |||||| |||||||||| | ||||| || |||||||||||||| |||| |||||| | || |||||||||||||    
T  34544215 cacactcttacccaaaaaccttaaggcaatgagtttatgggtcctctcatttataaagtgatcaacctccactt 34544142  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 23630424 - 23630348
Alignment:
Q  5 tgagatggacatcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaac 81  Q
    ||||| ||| ||||||||||||||||||   ||||||| ||||||||||| ||| ||||  ||||| | ||||||||    
T  23630424 tgagagggaaatcacacttttacccaaagtcttaagacgttgagtttatgagtcgtctcacttataaagtgttcaac 23630348  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 1188638 - 1188710
Alignment:
Q  17 cacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 89  Q
    |||||||||||||||||| ||||  || |||||||||| ||| ||||  ||||| ||| ||||||||||||||    
T  1188638 cacacttttacccaaaaccttaaagcaatgagtttatgagtcttctcacttataaaatattcaacctccactt 1188710  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 32594761 - 32594807
Alignment:
Q  12 gacatcacacttttacccaaaacgttaagacattgagtttatgggtc 58  Q
    |||| |||||| ||||||||||| |||||||| ||||||||||||||    
T  32594761 gacaccacactcttacccaaaaccttaagacaatgagtttatgggtc 32594807  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 1187413 - 1187486
Alignment:
Q  16 tcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 89  Q
    |||||||||||| |||||  |||||  | |||||||||||||| ||||  ||||| |||||| |||||||||||    
T  1187413 tcacacttttactcaaaatcttaaggtaatgagtttatgggtcttctcacttataaaatgtttaacctccactt 1187486  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 4154326 - 4154402
Alignment:
Q  12 gacatcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 89  Q
    ||||||||||  ||||||||||  ||||| || |||||||||||||| ||||  ||||| | ||||||||||||||||    
T  4154326 gacatcacacacttacccaaaatattaaggcaatgagtttatgggtc-tctcacttataaagtgttcaacctccactt 4154402  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 7192835 - 7192786
Alignment:
Q  5 tgagatggacatcacacttttacccaaaacgttaagacattgagtttatg 54  Q
    |||| |||||||||||  ||||| |||||| |||||||||||||||||||    
T  7192835 tgagttggacatcacatctttactcaaaaccttaagacattgagtttatg 7192786  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 21619095 - 21619136
Alignment:
Q  17 cacacttttacccaaaacgttaagacattgagtttatgggtc 58  Q
    |||||||||||||||||| |||||||| || |||||||||||    
T  21619095 cacacttttacccaaaaccttaagacaatgggtttatgggtc 21619136  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 260805 - 260846
Alignment:
Q  48 gtttatgggtcatctcttttatagaatgttcaacctccactt 89  Q
    |||||||||||||||| |||||| |||| |||||||||||||    
T  260805 gtttatgggtcatctcatttataaaatgatcaacctccactt 260846  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 32930775 - 32930698
Alignment:
Q  37 taagacattgagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaataatgtgagacttttaac 114  Q
    |||||||||||||||||| ||||||||  ||||| |||||||||| || |||| | |||| ||| | |||||| ||||    
T  32930775 taagacattgagtttatgagtcatctcacttataaaatgttcaacttctacttttctaaacaatataagacttctaac 32930698  T

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