View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11293A_low_279 (Length: 224)

Name: NF11293A_low_279
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11293A_low_279
NF11293A_low_279
[»] scaffold0128 (2 HSPs)
scaffold0128 (78-203)||(18554-18679)
scaffold0128 (21-77)||(18871-18926)
[»] chr8 (4 HSPs)
chr8 (113-200)||(13580396-13580485)
chr8 (148-200)||(28376659-28376711)
chr8 (115-200)||(26835636-26835721)
chr8 (128-192)||(22930331-22930395)
[»] chr1 (3 HSPs)
chr1 (115-200)||(8246762-8246847)
chr1 (115-200)||(1240429-1240514)
chr1 (146-200)||(3265538-3265592)
[»] chr6 (3 HSPs)
chr6 (115-200)||(12174322-12174407)
chr6 (151-200)||(10668956-10669005)
chr6 (148-200)||(9815747-9815799)
[»] chr5 (1 HSPs)
chr5 (115-200)||(16570538-16570623)
[»] chr4 (4 HSPs)
chr4 (147-200)||(47059692-47059745)
chr4 (147-200)||(47082057-47082110)
chr4 (146-200)||(12167052-12167106)
chr4 (131-200)||(36071615-36071684)
[»] chr2 (2 HSPs)
chr2 (115-200)||(40876967-40877052)
chr2 (148-200)||(5163794-5163846)
[»] chr7 (3 HSPs)
chr7 (128-200)||(3940706-3940778)
chr7 (128-200)||(9429391-9429463)
chr7 (148-200)||(35812616-35812668)
[»] chr3 (1 HSPs)
chr3 (128-200)||(15670920-15670992)


Alignment Details
Target: scaffold0128 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 18679 - 18554
Alignment:
Q  78 attatttcattatccacataattaataacttaacattaaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaa 177  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  18679 attatttcattatccacataattaataacttaacattaaatatttattttatagaattattcaaagcaagttaaaaagaaatacatgtatataccactaa 18580  T
Q  178 ctaataagtaaaaatattaatttcag 203  Q
    ||||||||||||||||||||||||||    
T  18579 ctaataagtaaaaatattaatttcag 18554  T

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Target: scaffold0128; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 18926 - 18871
Alignment:
Q  21 agttcaattccctccttctttgtatcatcaattcttggctttgcaggtttggttacc 77  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18926 agttcaattccctccttctttg-atcatcaattcttggctttgcaggtttggttacc 18871  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 200
Target Start/End: Original strand, 13580396 - 13580485
Alignment:
Q  113 ttaaatatatatttt--atagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 200  Q
    ||||| |||||||||  ||||||||| ||| ||| | ||||||||||||| || |||||| ||||||||| |||||||||||| ||||||    
T  13580396 ttaaaaatatattttcaatagaattaatcaaagcgaattaaaaagaaatatatttatataatactaactattaagtaaaaataataattt 13580485  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 28376711 - 28376659
Alignment:
Q  148 ttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 200  Q
    ||||||||||||| || |||||| ||||||||| |||||||||||| ||||||    
T  28376711 ttaaaaagaaatatatctatatagtactaactactaagtaaaaataataattt 28376659  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 200
Target Start/End: Original strand, 26835636 - 26835721
Alignment:
Q  115 aaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 200  Q
    |||||||| ||  ||||||||| | | || || ||||||||||||| || |||||  ||||||||| |||||||||||| ||||||    
T  26835636 aaatatattttcaatagaattaataaaagaaaattaaaaagaaatatatttatattgtactaactattaagtaaaaataataattt 26835721  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 22930395 - 22930331
Alignment:
Q  128 atagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaat 192  Q
    ||||||||| ||| ||| | ||||||||| ||| || |||||| ||||||||| |||||||||||    
T  22930395 atagaattaatcaaagcgaattaaaaagatatatatctatatagtactaactattaagtaaaaat 22930331  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 200
Target Start/End: Original strand, 8246762 - 8246847
Alignment:
Q  115 aaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 200  Q
    |||||||| ||  ||||||||| ||| | ||| ||||||||||||| || |||||| ||||||||| |||||||||||| ||||||    
T  8246762 aaatatattttcaatagaattaatcaaatcaaattaaaaagaaatatatctatatagtactaactattaagtaaaaataataattt 8246847  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 200
Target Start/End: Complemental strand, 1240514 - 1240429
Alignment:
Q  115 aaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 200  Q
    |||||||| ||  ||||||||| ||| |||   ||||||||||||| || |||||| ||||||||| |||||||||||| ||||||    
T  1240514 aaatatattttcaatagaattaatcaaagcggattaaaaagaaatatatttatatagtactaactactaagtaaaaataataattt 1240429  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 3265538 - 3265592
Alignment:
Q  146 agttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 200  Q
    ||||||||||||||| || ||| || ||||||||| |||||||||||| ||||||    
T  3265538 agttaaaaagaaatatatctatttaatactaactattaagtaaaaataataattt 3265592  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 200
Target Start/End: Complemental strand, 12174407 - 12174322
Alignment:
Q  115 aaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 200  Q
    |||||||| ||| ||| ||||| ||| | | | ||||||||||||| || |||||| ||||||||| |||||||||||| ||||||    
T  12174407 aaatatatttttaatataattaatcaaaacgaattaaaaagaaatatatctatatagtactaactactaagtaaaaataataattt 12174322  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 10668956 - 10669005
Alignment:
Q  151 aaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 200  Q
    |||||| ||| || |||||| |||||||||||||||||||||| ||||||    
T  10668956 aaaagatatatatctatataatactaactaataagtaaaaataataattt 10669005  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 9815747 - 9815799
Alignment:
Q  148 ttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 200  Q
    ||||||||||||| || |||||| || |||||| |||||||||||| ||||||    
T  9815747 ttaaaaagaaatatatctatatagtattaactactaagtaaaaataataattt 9815799  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 200
Target Start/End: Original strand, 16570538 - 16570623
Alignment:
Q  115 aaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 200  Q
    |||||||| ||| ||||||||| ||| ||  | ||||||||||||| || |||||  ||| |||||||||||||||||| ||||||    
T  16570538 aaatatatttttaatagaattaatcaaagtgaattaaaaagaaatatatctatatggtaccaactaataagtaaaaataataattt 16570623  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 47059745 - 47059692
Alignment:
Q  147 gttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 200  Q
    |||||||||||||| || | |||| |||||||||||||||||||||| ||||||    
T  47059745 gttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattt 47059692  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 47082057 - 47082110
Alignment:
Q  147 gttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 200  Q
    |||||||||||||| || | |||| |||||||||||||||||||||| ||||||    
T  47082057 gttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattt 47082110  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 12167106 - 12167052
Alignment:
Q  146 agttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 200  Q
    ||||||||| |||||||| ||||||||||||| || |||| ||||||| ||||||    
T  12167106 agttaaaaataaatacatatatatactactaattactaagcaaaaataataattt 12167052  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 200
Target Start/End: Original strand, 36071615 - 36071684
Alignment:
Q  131 gaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 200  Q
    |||||| ||| || || ||||||||||||| || |||||| |||||||||  ||||||||||| ||||||    
T  36071615 gaattaatcaaagaaaattaaaaagaaatatatctatatagtactaactatcaagtaaaaataataattt 36071684  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 200
Target Start/End: Original strand, 40876967 - 40877052
Alignment:
Q  115 aaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 200  Q
    |||||||| ||  ||||||||| ||  | ||||||||||||||||| || |||||| |||||||||  ||||||||||| ||||||    
T  40876967 aaatatattttcaatagaattaatccaaacaagttaaaaagaaatatatttatataatactaactaccaagtaaaaataataattt 40877052  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 5163846 - 5163794
Alignment:
Q  148 ttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 200  Q
    ||||||||| ||| || |||||| ||||||||| |||||||||||| ||||||    
T  5163846 ttaaaaagatatatatttatatagtactaactactaagtaaaaataataattt 5163794  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 3940706 - 3940778
Alignment:
Q  128 atagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 200  Q
    ||||||||| ||| || || ||||||||||||| || |||||  |||| |||| |||||||||||| ||||||    
T  3940706 atagaattaatcaaagtaaattaaaaagaaatatatctatattatacttactactaagtaaaaataataattt 3940778  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 9429391 - 9429463
Alignment:
Q  128 atagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 200  Q
    ||||||||| ||| | | || |||||||||||| || |||||| ||||||||| ||| |||||||| ||||||    
T  9429391 atagaattaatcaaaacgagataaaaagaaatatatttatataatactaactattaaataaaaatactaattt 9429463  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 35812668 - 35812616
Alignment:
Q  148 ttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 200  Q
    ||||||||||||| || |||||| |||||| || |||||||||||| ||||||    
T  35812668 ttaaaaagaaatatatctatatagtactaattattaagtaaaaataataattt 35812616  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 200
Target Start/End: Complemental strand, 15670992 - 15670920
Alignment:
Q  128 atagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 200  Q
    ||||||||| ||| | ||| ||||||||||||| || |||||  || |||||| |||||||||||| ||||||    
T  15670992 atagaattaatcaaaacaaattaaaaagaaatatatctatattgtaataactactaagtaaaaataataattt 15670920  T

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