View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11293A_low_281 (Length: 222)

Name: NF11293A_low_281
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11293A_low_281
NF11293A_low_281
[»] chr1 (2 HSPs)
chr1 (1-222)||(47673871-47674092)
chr1 (9-222)||(47685993-47686206)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 47673871 - 47674092
Alignment:
Q  1 ttctcgtggatcgatgtggaatacaaaaagaagcaatttgttacttcgacttgtgtagtttacgttattcaaatgattcaatttttggtgtcatggaaac 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47673871 ttctcgtggatcgatgtggaatacaaaaagaagcaattggttacttcgacttgtgtagtttacgttattcaaatgattcaatttttggtgtcatggaaac 47673970  T
Q  101 taaaacaagtaattatttcaatatcaaagctaatacaagggcggatgatgcatttaatcaaacacttcttgatttgttggatgaacttaaaaccgtggcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47673971 taaaacaagtaattatttcaatatcaaagctaatacaagggcggatgatgcatttaatcaaacacttcttgatttgttggatgaacttaaaaccgtggcc 47674070  T
Q  201 gctgatggtgattcgcgtaaga 222  Q
    ||||||||||||||||||||||    
T  47674071 gctgatggtgattcgcgtaaga 47674092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 47685993 - 47686206
Alignment:
Q  9 gatcgatgtggaatacaaaaagaagcaatttgttacttcgacttgtgtagtttacgttattcaaatgattcaatttttggtgtcatggaaactaaaacaa 108  Q
    ||||||||||||  |||||||||||||||| ||||||  ||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  47685993 gatcgatgtggagaacaaaaagaagcaattggttactatgacttgtgtatcttacgttattcaaatgattcaatttttggtatcatggaaactaaaacaa 47686092  T
Q  109 gtaattatttcaatatcaaagctaatacaagggcggatgatgcatttaatcaaacacttcttgatttgttggatgaacttaaaaccgtggccgctgatgg 208  Q
    |||| |||||| ||||  |||  || |||   | | |||||||||||||||| |||||| ||||||||||||||||||||||||  ||||||  ||||||    
T  47686093 gtaagtatttcgatatggaaggcaaaacagtagggaatgatgcatttaatcagacacttattgatttgttggatgaacttaaaagtgtggccattgatgg 47686192  T
Q  209 tgattcgcgtaaga 222  Q
    ||||||||||||||    
T  47686193 tgattcgcgtaaga 47686206  T

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