View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11293A_low_285 (Length: 221)

Name: NF11293A_low_285
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11293A_low_285
NF11293A_low_285
[»] chr4 (3 HSPs)
chr4 (15-203)||(54433666-54433854)
chr4 (114-206)||(53322966-53323058)
chr4 (155-206)||(8063538-8063589)
[»] chr3 (2 HSPs)
chr3 (15-202)||(50522817-50523004)
chr3 (155-206)||(1679122-1679173)
[»] chr7 (4 HSPs)
chr7 (15-206)||(25557737-25557928)
chr7 (114-206)||(27397517-27397609)
chr7 (155-206)||(11058553-11058604)
chr7 (155-206)||(40096283-40096334)
[»] chr8 (7 HSPs)
chr8 (114-206)||(37669194-37669286)
chr8 (155-206)||(4246553-4246604)
chr8 (155-206)||(5540046-5540097)
chr8 (155-206)||(34900812-34900863)
chr8 (155-206)||(43771157-43771208)
chr8 (155-206)||(45216663-45216714)
chr8 (166-206)||(28876019-28876059)
[»] chr2 (4 HSPs)
chr2 (114-206)||(6497072-6497164)
chr2 (15-78)||(32750826-32750887)
chr2 (155-206)||(22484893-22484944)
chr2 (155-206)||(40308279-40308330)
[»] chr6 (2 HSPs)
chr6 (155-206)||(1036257-1036308)
chr6 (155-206)||(7188221-7188272)
[»] chr5 (2 HSPs)
chr5 (155-206)||(9792922-9792973)
chr5 (161-206)||(1639236-1639281)
[»] chr1 (4 HSPs)
chr1 (155-206)||(6916305-6916356)
chr1 (155-206)||(8132796-8132847)
chr1 (155-206)||(38331063-38331114)
chr1 (155-206)||(52895144-52895195)


Alignment Details
Target: chr4 (Bit Score: 173; Significance: 3e-93; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 15 - 203
Target Start/End: Complemental strand, 54433854 - 54433666
Alignment:
Q  15 tcatcatcagcactaccgaaaaaggacatagtttagctattcataaagaacatcatagtccaacatccactacttaagaggaaacaaggattgtatcagt 114  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  54433854 tcatcatcagcactacccaaaaaggacatagtttagctattcataaagaacatcatagtccaacattcactacttaagaggaaacaaggattgtatcagt 54433755  T
Q  115 ctcctctcctccgtttccatcatcaaagaacattgtagcctccaactccggttcatctaaagataactcagctaattcaattccaacac 203  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  54433754 ctcctctcctccgtttccatcatcaaagaacattgtagtctccaactccgattcatctaaagataactcagctaattcaattccaacac 54433666  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 206
Target Start/End: Complemental strand, 53323058 - 53322966
Alignment:
Q  114 tctcctctcctccgtttccatcatcaaagaacattgtagcctccaactccggttcatctaaagataactcagctaattcaattccaacaccat 206  Q
    ||||||||||||| || ||||||||||   |||   |||| ||||| ||||||||||| ||||| ||||| ||||| ||||||||||||||||    
T  53323058 tctcctctcctccattcccatcatcaagatacaaattagcttccaaatccggttcatccaaagacaactctgctaactcaattccaacaccat 53322966  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 8063538 - 8063589
Alignment:
Q  155 tccaactccggttcatctaaagataactcagctaattcaattccaacaccat 206  Q
    ||||| ||||||||||| ||||| ||||| ||||| ||||||||||||||||    
T  8063538 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccat 8063589  T

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Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 15 - 202
Target Start/End: Original strand, 50522817 - 50523004
Alignment:
Q  15 tcatcatcagcactaccgaaaaaggacatagtttagctattcataaagaacatcatagtccaacatccactacttaagaggaaacaaggattgtatcagt 114  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||| |||||||||    
T  50522817 tcatcatcagcactacccaaaaaggacatagtttagctattcataaagaacatcatagtccaacattcactccttaagaggaaacacggactgtatcagt 50522916  T
Q  115 ctcctctcctccgtttccatcatcaaagaacattgtagcctccaactccggttcatctaaagataactcagctaattcaattccaaca 202  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  50522917 ctcctctcctctgtttccatcatcaaagaacattgtagcctccaacttcggttcatctaaagataactcagctaattcaattccaaca 50523004  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 1679122 - 1679173
Alignment:
Q  155 tccaactccggttcatctaaagataactcagctaattcaattccaacaccat 206  Q
    ||||| ||||||||||| ||||| ||||| ||||| ||||||||||||||||    
T  1679122 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccat 1679173  T

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Target: chr7 (Bit Score: 156; Significance: 5e-83; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 25557928 - 25557737
Alignment:
Q  15 tcatcatcagcactaccgaaaaaggacatagtttagctattcataaagaacatcatagtccaacatccactacttaagaggaaacaaggattgtatcagt 114  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||| ||    
T  25557928 tcatcatcagcactacccaaaaaggacatagtttagctattcataaagaacatcatagtccaacattcactacttaagaggaaacactgattgtatcggt 25557829  T
Q  115 ctcctctcctccgtttccatcatcaaagaacattgtagcctccaactccggttcatctaaagataactcagctaattcaattccaacaccat 206  Q
    ||||||||||| ||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25557828 ctcctctcctctgtttccatcatcaaagaacattaaagcctccaactctggttcatctaaagataactcagctaattcaattccaacaccat 25557737  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 27397517 - 27397609
Alignment:
Q  114 tctcctctcctccgtttccatcatcaaagaacattgtagcctccaactccggttcatctaaagataactcagctaattcaattccaacaccat 206  Q
    ||||||||||||| || ||||||||||   |||   |||| | ||| ||||||||||| ||||| ||||| ||||| ||||||||||||||||    
T  27397517 tctcctctcctccattcccatcatcaagatacaaattagctttcaaatccggttcatccaaagacaactctgctaactcaattccaacaccat 27397609  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 11058604 - 11058553
Alignment:
Q  155 tccaactccggttcatctaaagataactcagctaattcaattccaacaccat 206  Q
    ||||| ||||||||||| ||||| ||||| ||||| ||||||||||||||||    
T  11058604 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccat 11058553  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 40096334 - 40096283
Alignment:
Q  155 tccaactccggttcatctaaagataactcagctaattcaattccaacaccat 206  Q
    ||||| ||||||||||| ||||| ||||| ||||| ||||||||||||||||    
T  40096334 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccat 40096283  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 206
Target Start/End: Complemental strand, 37669286 - 37669194
Alignment:
Q  114 tctcctctcctccgtttccatcatcaaagaacattgtagcctccaactccggttcatctaaagataactcagctaattcaattccaacaccat 206  Q
    ||||||||||||| || ||||||||||   |||    ||| ||||| ||||||||||| ||||| ||||| ||||| ||||||||||||||||    
T  37669286 tctcctctcctccattcccatcatcaagatacaaatcagcttccaaatccggttcatccaaagacaactctgctaactcaattccaacaccat 37669194  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 4246604 - 4246553
Alignment:
Q  155 tccaactccggttcatctaaagataactcagctaattcaattccaacaccat 206  Q
    ||||| ||||||||||| ||||| ||||| ||||| ||||||||||||||||    
T  4246604 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccat 4246553  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 5540097 - 5540046
Alignment:
Q  155 tccaactccggttcatctaaagataactcagctaattcaattccaacaccat 206  Q
    ||||| ||||||||||| ||||| ||||| ||||| ||||||||||||||||    
T  5540097 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccat 5540046  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 34900812 - 34900863
Alignment:
Q  155 tccaactccggttcatctaaagataactcagctaattcaattccaacaccat 206  Q
    ||||| ||||||||||| ||||| ||||| ||||| ||||||||||||||||    
T  34900812 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccat 34900863  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 43771157 - 43771208
Alignment:
Q  155 tccaactccggttcatctaaagataactcagctaattcaattccaacaccat 206  Q
    ||||| ||||||||||| ||||| ||||| ||||| ||||||||||||||||    
T  43771157 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccat 43771208  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 45216663 - 45216714
Alignment:
Q  155 tccaactccggttcatctaaagataactcagctaattcaattccaacaccat 206  Q
    ||||| ||||||||||| ||||| ||||| ||||| ||||||||||||||||    
T  45216663 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccat 45216714  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 28876019 - 28876059
Alignment:
Q  166 ttcatctaaagataactcagctaattcaattccaacaccat 206  Q
    |||||||||||| ||||| ||||| ||||||||||||||||    
T  28876019 ttcatctaaagacaactctgctaactcaattccaacaccat 28876059  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 6497072 - 6497164
Alignment:
Q  114 tctcctctcctccgtttccatcatcaaagaacattgtagcctccaactccggttcatctaaagataactcagctaattcaattccaacaccat 206  Q
    ||||||||||||| || ||||||||||   |||    ||| ||||| ||||||||||| ||||| ||||| ||||| ||||||||||||||||    
T  6497072 tctcctctcctccattcccatcatcaagatacaaatcagcttccaaatccggttcatccaaagacaactctgctaactcaattccaacaccat 6497164  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 32750826 - 32750887
Alignment:
Q  15 tcatcatcagcactaccgaaaaaggacatagtttagctattcataaagaacatcatagtccaac 78  Q
    |||||||||  |||||| ||||| ||||  |||||||||| |||||||||||||||||||||||    
T  32750826 tcatcatcattactacccaaaaaagaca--gtttagctatccataaagaacatcatagtccaac 32750887  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 22484944 - 22484893
Alignment:
Q  155 tccaactccggttcatctaaagataactcagctaattcaattccaacaccat 206  Q
    ||||| ||||||||||| ||||| ||||| ||||| ||||||||||||||||    
T  22484944 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccat 22484893  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 40308279 - 40308330
Alignment:
Q  155 tccaactccggttcatctaaagataactcagctaattcaattccaacaccat 206  Q
    ||||| ||||||||||| ||||| ||||| ||||| ||||||||||||||||    
T  40308279 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccat 40308330  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 1036257 - 1036308
Alignment:
Q  155 tccaactccggttcatctaaagataactcagctaattcaattccaacaccat 206  Q
    ||||| ||||||||||| ||||| ||||| ||||| ||||||||||||||||    
T  1036257 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccat 1036308  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 7188221 - 7188272
Alignment:
Q  155 tccaactccggttcatctaaagataactcagctaattcaattccaacaccat 206  Q
    ||||| ||||||||||| ||||| ||||| ||||| ||||||||||||||||    
T  7188221 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccat 7188272  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 9792973 - 9792922
Alignment:
Q  155 tccaactccggttcatctaaagataactcagctaattcaattccaacaccat 206  Q
    ||||| ||||||||||| ||||| ||||| ||||| ||||||||||||||||    
T  9792973 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccat 9792922  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 1639236 - 1639281
Alignment:
Q  161 tccggttcatctaaagataactcagctaattcaattccaacaccat 206  Q
    ||||||||||| ||||| ||||| ||||| ||||||||||||||||    
T  1639236 tccggttcatccaaagacaactctgctaactcaattccaacaccat 1639281  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 6916305 - 6916356
Alignment:
Q  155 tccaactccggttcatctaaagataactcagctaattcaattccaacaccat 206  Q
    ||||| ||||||||||| ||||| ||||| ||||| ||||||||||||||||    
T  6916305 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccat 6916356  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 8132847 - 8132796
Alignment:
Q  155 tccaactccggttcatctaaagataactcagctaattcaattccaacaccat 206  Q
    ||||| ||||||||||| ||||| ||||| ||||| ||||||||||||||||    
T  8132847 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccat 8132796  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 38331114 - 38331063
Alignment:
Q  155 tccaactccggttcatctaaagataactcagctaattcaattccaacaccat 206  Q
    ||||| ||||||||||| ||||| ||||| ||||| ||||||||||||||||    
T  38331114 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccat 38331063  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 52895144 - 52895195
Alignment:
Q  155 tccaactccggttcatctaaagataactcagctaattcaattccaacaccat 206  Q
    ||||| ||||||||||| ||||| ||||| ||||| ||||||||||||||||    
T  52895144 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccat 52895195  T

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