View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_286 (Length: 220)
Name: NF11293A_low_286
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_286 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 21 - 194
Target Start/End: Original strand, 21378359 - 21378532
Alignment:
| Q |
21 |
actatattcactccaagctatcttcagttaacctacctgctatttatggtaaccttattggaacagggaactattttgttgttgtagggcttggtactcc |
120 |
Q |
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| T |
21378359 |
actatattcactccaagctatcttcagataacctacctgctatttatggtaaccttattggaacagggaactattttgttgttgtagggcttggtactcc |
21378458 |
T |
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| Q |
121 |
taaaaggaacttgtctcttgtttttgatactggtagtgatctcacttggactcagtgtccaccttgtgatcgtc |
194 |
Q |
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| T |
21378459 |
taaaaggaacttgtctcttgtttttgatactggtagtgatctcacttggactcagtgtcaaccttgtgctcgtc |
21378532 |
T |
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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 44 - 188
Target Start/End: Original strand, 21404851 - 21404995
Alignment:
| Q |
44 |
tcagttaacctacctgctatttatggtaaccttattggaacagggaactattttgttgttgtagggcttggtactcctaaaaggaacttgtctcttgttt |
143 |
Q |
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| T |
21404851 |
tcagctaacctaccagctaaatctggtagccttattggatcagggaattattttgttgttttagggcttggaactcctaaaaaggatttgtcacttattt |
21404950 |
T |
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| Q |
144 |
ttgatactggtagtgatctcacttggactcagtgtccaccttgtg |
188 |
Q |
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| T |
21404951 |
ttgacactggtagtgatctcacttggactcaatgtcaaccttgtg |
21404995 |
T |
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