View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_29 (Length: 416)
Name: NF11293A_low_29
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_29 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 5 - 416
Target Start/End: Complemental strand, 19460862 - 19460451
Alignment:
| Q |
5 |
gactgatatgaacaaggggaagaggatttgatctatttcggaaggagaatattgggagagaaggaggaactctacttcacttgtaataaaaaattcacat |
104 |
Q |
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| T |
19460862 |
gactgataagaacaaggggaagaggatttgatctatttcagaaggagaatattggaagagaaggaggaactctacttcacttgtaataaaaaattcacat |
19460763 |
T |
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| Q |
105 |
cgacgcatgtttgtaaaacaacatttcaaggtgatgattgtgaaggaattagagggagtagaaggggggagctagagaaaaatggactcgagggttcttt |
204 |
Q |
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| T |
19460762 |
cgacacatgtttgtaaaacagcatttcaaggtgatgattgtgaaggaattagagggagtagaaggggggagctagagaaaaatggactcgagggttcttt |
19460663 |
T |
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| Q |
205 |
gaatgagagaatggtgaagttagacattcaaagcatggtagggcttactccggagagagaactcaaacttggggtacttttctgaaaagtgtggtgacaa |
304 |
Q |
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| T |
19460662 |
gaatgagagaatggtgaagttagacattcaaagcatggtagggcttactccggagagagaactcaaacttggggtacttttctgaaaagtgtggtgacaa |
19460563 |
T |
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| Q |
305 |
tcctaattgacagtggactagaggagcaacccacaactttatttctcagcgggtggtgagagatctcaacataccagtagagaaaattcctacaatccta |
404 |
Q |
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| T |
19460562 |
tcctaattgacagtggactagtggagcaacccacaactttatttctcagcgggtggtgagagatctcaacataccagtagagaaaattcctacaatccta |
19460463 |
T |
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| Q |
405 |
cctgtcgggtga |
416 |
Q |
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| T |
19460462 |
cctatcgggtga |
19460451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 63 - 396
Target Start/End: Original strand, 10192773 - 10193115
Alignment:
| Q |
63 |
agaaggaggaactctacttcacttgtaataaaaaa-ttcacatcgacgcatgtttgtaaaacaacatttcaaggtgatgattgtgaaggaa---ttagag |
158 |
Q |
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| T |
10192773 |
agaaggaggaactctgcttcacttgtgataaaaaaattcacaccttcacatgtttgtaaaaca---tttcatggtgatgattgtgaaggaagaattcgag |
10192869 |
T |
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| Q |
159 |
ggagtagaagggggg-agctagagaaaaatg---gactcgagggttctttgaatgagagaatggtgaagttagacattcaaagcatggtagggcttactc |
254 |
Q |
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| T |
10192870 |
ggagtagaagggggggagctagagcaaaatgaaggagttgag--ttctttgaatgagaaaatggtgaagttggccattcaaagcatagtagggcttactc |
10192967 |
T |
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| Q |
255 |
cggagagagaactcaaac-ttggggtacttttctgaaaagtgtggtgacaatcctaattgacagtggactagaggagc-aacccacaact----ttattt |
348 |
Q |
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| T |
10192968 |
cgaagagggcactcaaactttggggtacttttctgaaaagtgcggtgacaatcctaattaccagtggaatagtgaagcaaacccacaactttaattattt |
10193067 |
T |
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| Q |
349 |
ctcagcgggtggtgagagatctcaacataccagtagagaaaattccta |
396 |
Q |
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| T |
10193068 |
ctcagcaattggtcagagatctcagcataccagtagagtacattccta |
10193115 |
T |
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