View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_299 (Length: 209)
Name: NF11293A_low_299
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_299 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 7 - 209
Target Start/End: Original strand, 6915465 - 6915667
Alignment:
| Q |
7 |
tttcgagttggagcaaaggaagtttggtcagttaacatatctaagagtttatgagggcgtcattcggaagggtgattttattgttaatgttagcactgga |
106 |
Q |
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| T |
6915465 |
tttcaagttggagcaaacgaagtttggtcagttaacatatctaagagtttatgagggtgtcattcggaagggtgattttattgttaatgttagcactgga |
6915564 |
T |
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| Q |
107 |
aagaaaattaaggttcctcgcttagttgagatgcattctaatgagatgaatgacattgaagaggcccatgctggccaactagttgctgtatttggtgttg |
206 |
Q |
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| T |
6915565 |
aagaaaattaaggttcctcgcttagttcagatgcattctaatgagatgaacgacattgaagaggcccatgctggccaaatagttgctgtatttggtgttg |
6915664 |
T |
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| Q |
207 |
att |
209 |
Q |
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| T |
6915665 |
att |
6915667 |
T |
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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 15043854 - 15043792
Alignment:
| Q |
49 |
aagagtttatgagggcgtcattcggaagggtgattttattgttaatgttagcactggaaagaa |
111 |
Q |
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| T |
15043854 |
aagaatttatgagggcgtcattcggaagggtgatttcattattaatgttaacactggcaagaa |
15043792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 15041895 - 15041847
Alignment:
| Q |
161 |
attgaagaggcccatgctggccaactagttgctgtatttggtgttgatt |
209 |
Q |
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| T |
15041895 |
attgatgaggctcatgctggccaaatagttgctgtatttggtgttgatt |
15041847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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