View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_30 (Length: 413)
Name: NF11293A_low_30
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 48668862 - 48669045
Alignment:
| Q |
14 |
agatagtatagtaataaaaagatagcagttccccctcctctatgaactttaatcccatgcacccacttgcattaaatgaagaaattaattccattgaaat |
113 |
Q |
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| T |
48668862 |
agatagtatagtaataaaaagatagcagttccccctcctctatgaactttaatcccatgcacccacttgcattaaatgaagaaattaattccattgaaat |
48668961 |
T |
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| Q |
114 |
ttcccaactacacaaacaccaattaggtattagcattaactcttttccacccaccttatgtaaaatcaatttcatggatttcat |
197 |
Q |
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| T |
48668962 |
ttcccaactacacaaacaccaattaggtattagcattaactcttttccacccacctcatgtaaaatcaatttcatggatttcat |
48669045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 279 - 413
Target Start/End: Original strand, 48669127 - 48669261
Alignment:
| Q |
279 |
tattctgctgttccaactatggctactaacgaaggtgacatgttctcagcagagattgtgaaccgtgggattgaatcatcgggtccgaacgccggttcat |
378 |
Q |
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| T |
48669127 |
tattctgctgttccaactatggctactaacgaaggtgacatgttctcagcagagattgtgaaccgtgggattgaatcatcgggtccgaacgccggttcat |
48669226 |
T |
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| Q |
379 |
tgacgttctctgttcgtgttcggagacggttaccg |
413 |
Q |
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| T |
48669227 |
tgacgttctctgtccgtgttcggagacggttaccg |
48669261 |
T |
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