View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11293A_low_302 (Length: 208)
Name: NF11293A_low_302
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_302 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 31828303 - 31828144
Alignment:
| Q |
21 |
caagaggacacgaccaccactgatccagttcatatttgaagattgtggattttgttaaccagttccaagagagtaatccgacttgatctacaatcttatc |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
31828303 |
caagaggacacgaccaccactgatccagttcatatttgaagattgtggattttgttaaccagttccaagagagtaatctgacttgatctacaatcttatc |
31828204 |
T |
|
| Q |
121 |
agttgagacctttttgtcctgannnnnnnnagcgtttctcgccttccaaatgctccataa |
180 |
Q |
| |
|
||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31828203 |
agtcgagacctttttgtcctgaatttttttagcgtttctcgccttccaaatgctccataa |
31828144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University