View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_303 (Length: 208)
Name: NF11293A_low_303
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_303 |
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Alignment Details
Target: chr3 (Bit Score: 117; Significance: 8e-60; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 64 - 188
Target Start/End: Complemental strand, 10368795 - 10368671
Alignment:
| Q |
64 |
atatatatataaggggtgagatcgaaatgcaaacccatacctagaaatagtaacttccttcttcttcttgccgtccttttcaattttcataccaccacag |
163 |
Q |
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| T |
10368795 |
atatatatataaggggtgagatcgaaatgcaaacccatacctagaaatagtaacttccttcttcttcttgccgtccttttcaattttcataccactacag |
10368696 |
T |
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| Q |
164 |
cacgggttgtgatgaaggagatgat |
188 |
Q |
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| T |
10368695 |
tacgggttgtgatgaaggagatgat |
10368671 |
T |
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Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 10368873 - 10368827
Alignment:
| Q |
28 |
tatactccacaattgttccttaagacacacacacgcatatatatata |
74 |
Q |
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| T |
10368873 |
tatactccacaattgttccttaagacacacacacgcatatatatata |
10368827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 11659658 - 11659585
Alignment:
| Q |
74 |
aaggggtgagatcgaaatgcaaacccatacctagaaatagtaacttccttcttcttcttgccgtccttttcaat |
147 |
Q |
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| T |
11659658 |
aaggagtgagatcgaaatgcaaacccataccttgaaatagtagcctccttcttgttcttgctgtccttttcaat |
11659585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 11668827 - 11668754
Alignment:
| Q |
74 |
aaggggtgagatcgaaatgcaaacccatacctagaaatagtaacttccttcttcttcttgccgtccttttcaat |
147 |
Q |
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| T |
11668827 |
aaggagtgagatcgaaatgcaaaccgataccttgaaatagtagcctccttcttctttttgctgtccttttcaat |
11668754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 53239290 - 53239215
Alignment:
| Q |
109 |
aatagtaacttccttcttcttcttgccgtccttttcaattttcataccaccacagcacgggttgtgatgaaggaga |
184 |
Q |
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||||||| |||| ||||||||||||| ||||||||||||||||| ||||| |||| | ||||| |||||||||| |
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| T |
53239290 |
aatagtagcttctttcttcttcttgctgtccttttcaattttcagaccactgcagcgctggttgcaatgaaggaga |
53239215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 2170405 - 2170330
Alignment:
| Q |
109 |
aatagtaacttccttcttcttcttgccgtccttttcaattttcataccaccacagcacgggttgtgatgaaggaga |
184 |
Q |
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||||||| |||| ||||||||||||| ||||||||||||||||| ||||| |||| | ||||| |||||||||| |
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| T |
2170405 |
aatagtagcttctttcttcttcttgctgtccttttcaattttcagaccactgcagcgctggttgcaatgaaggaga |
2170330 |
T |
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