View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11293A_low_304 (Length: 207)

Name: NF11293A_low_304
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11293A_low_304
NF11293A_low_304
[»] chr2 (19 HSPs)
chr2 (22-192)||(44624828-44624998)
chr2 (42-192)||(44615455-44615605)
chr2 (31-192)||(39153105-39153266)
chr2 (55-183)||(39472763-39472891)
chr2 (55-192)||(39138692-39138826)
chr2 (31-186)||(39387469-39387624)
chr2 (58-192)||(39371163-39371297)
chr2 (31-192)||(39216703-39216864)
chr2 (31-192)||(39396627-39396788)
chr2 (56-185)||(39205742-39205871)
chr2 (31-186)||(39196485-39196640)
chr2 (31-186)||(39413004-39413159)
chr2 (58-192)||(39380496-39380630)
chr2 (63-185)||(44895114-44895236)
chr2 (56-182)||(39478294-39478420)
chr2 (31-186)||(39421161-39421313)
chr2 (56-185)||(39223764-39223893)
chr2 (40-192)||(39188738-39188890)
chr2 (44-192)||(39604362-39604510)
[»] chr8 (3 HSPs)
chr8 (55-192)||(44730161-44730298)
chr8 (30-192)||(44949869-44950031)
chr8 (33-192)||(45343011-45343170)
[»] chr5 (2 HSPs)
chr5 (30-186)||(17060698-17060854)
chr5 (31-186)||(33562341-33562496)
[»] scaffold0283 (1 HSPs)
scaffold0283 (30-192)||(5849-6011)
[»] chr7 (1 HSPs)
chr7 (55-192)||(19808949-19809083)
[»] chr6 (1 HSPs)
chr6 (128-185)||(16114420-16114477)


Alignment Details
Target: chr2 (Bit Score: 159; Significance: 7e-85; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 22 - 192
Target Start/End: Complemental strand, 44624998 - 44624828
Alignment:
Q  22 cttgtatccagcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacc 121  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44624998 cttgtatccagcaacagatccaaaaagcttttagacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacc 44624899  T
Q  122 tccaaagaattttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctct 192  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44624898 tccaaataattttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctct 44624828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 42 - 192
Target Start/End: Complemental strand, 44615605 - 44615455
Alignment:
Q  42 caaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtatt 141  Q
    |||||| ||| | |||||||||||||||||| ||| ||  |||||| |||||||| ||||||||||||||||| ||| |||||||||||||||| |||||    
T  44615605 caaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtatt 44615506  T
Q  142 ttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctct 192  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  44615505 ttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctct 44615455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 31 - 192
Target Start/End: Complemental strand, 39153266 - 39153105
Alignment:
Q  31 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 130  Q
    ||||||| || |||||||||  | ||||||||||| ||| ||| |||||  |||||||||||||||||||| || |||||| || |||||| ||||||||    
T  39153266 agcaacaaatgcaaaaagctccaagacttcatctttatcgaaagaagtaaccaatccataaatcgacaaaaccagtagaaaaccaagaaccaccaaagaa 39153167  T
Q  131 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctct 192  Q
    ||||||||||||||||| || ||||||||||| ||| | || || ||||||||||| |||||    
T  39153166 ttttcagtattttcttttattttagctttcaaatcatgtgcgagtttcaatgcttcttctct 39153105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 55 - 183
Target Start/End: Original strand, 39472763 - 39472891
Alignment:
Q  55 gacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgtta 154  Q
    ||||||||||||||||||| ||||| ||||| ||||||| ||||||| || |||||| || |||||  ||||||||||||||||||||||||||||||||    
T  39472763 gacttcatcttcatcaaaagaagtaagcaattcataaattgacaaaagcagtagaaaaccaagaactaccaaagaattttcagtattttctttcatgtta 39472862  T
Q  155 gctttcaactcacgcgctagcttcaatgc 183  Q
     ||||||| ||| | || |||||||||||    
T  39472863 actttcaaatcaagtgcgagcttcaatgc 39472891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 55 - 192
Target Start/End: Complemental strand, 39138826 - 39138692
Alignment:
Q  55 gacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgtta 154  Q
    ||||||||||||||||||||||||| ||||| ||||||  |||||||||| |||||| ||||||||| ||| |||||||||||||||   ||||||||||    
T  39138826 gacttcatcttcatcaaaataagtaagcaattcataaactgacaaaatcagtagaaaaccgagaaccaccagagaattttcagtatt---tttcatgtta 39138730  T
Q  155 gctttcaactcacgcgctagcttcaatgcttcatctct 192  Q
    |||||||  | | | ||||||||||||||||| |||||    
T  39138729 gctttcagattaagtgctagcttcaatgcttcttctct 39138692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 31 - 186
Target Start/End: Original strand, 39387469 - 39387624
Alignment:
Q  31 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 130  Q
    ||||||| || |||||||||  |  ||||||||||| |||||||||  | |||  |||||||| ||||||| ||  ||||| || |||||  ||||||||    
T  39387469 agcaacaaatgcaaaaagctccaaaacttcatcttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaa 39387568  T
Q  131 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttc 186  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  39387569 ttttcagtattttctttcatgttagcttttaaatcacgcgctagcttcaatgcttc 39387624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 58 - 192
Target Start/End: Complemental strand, 39371297 - 39371163
Alignment:
Q  58 ttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttagct 157  Q
    |||||||||||||||| |||||  |||||||||| | ||||||| ||||||||| || |||||| |||||| ||||| | |||||||||||||||| |||    
T  39371297 ttcatcttcatcaaaagaagtaaccaatccataatttgacaaaagcaatagaaaaccaagaaccaccaaaggatttttactattttctttcatgttggct 39371198  T
Q  158 ttcaactcacgcgctagcttcaatgcttcatctct 192  Q
    ||||  ||| | |||||||||||||||||||||||    
T  39371197 ttcatatcaagtgctagcttcaatgcttcatctct 39371163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 31 - 192
Target Start/End: Complemental strand, 39216864 - 39216703
Alignment:
Q  31 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 130  Q
    |||||||||| |||||||||  |  |||||||||||| ||||| |||||  |||||||||||| ||||||| ||  ||||| ||||||||| ||||||||    
T  39216864 agcaacagatgcaaaaagctccaaaacttcatcttcaccaaaagaagtaaccaatccataaattgacaaaagcagaagaaaaccgagaaccaccaaagaa 39216765  T
Q  131 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctct 192  Q
    |||| |||||||||  ||||||||| |||||| |||   ||||||||||||||||| |||||    
T  39216764 tttttagtattttcactcatgttagatttcaaatcaaatgctagcttcaatgcttcttctct 39216703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 31 - 192
Target Start/End: Original strand, 39396627 - 39396788
Alignment:
Q  31 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 130  Q
    |||||| ||| |||||||||  |  |||||||||||||| ||| ||||| ||||||||||||| ||||||| ||| | ||| || |||||| ||||||||    
T  39396627 agcaaccgatgcaaaaagctccaaaacttcatcttcatcgaaagaagtaagcaatccataaattgacaaaagcaacaaaaaaccaagaaccgccaaagaa 39396726  T
Q  131 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctct 192  Q
    ||||||||||||||| | |||| |||| |||| ||| | |||||||||| |||||| |||||    
T  39396727 ttttcagtattttctctaatgtaagctctcaaatcatgtgctagcttcagtgcttcttctct 39396788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 56 - 185
Target Start/End: Original strand, 39205742 - 39205871
Alignment:
Q  56 acttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttag 155  Q
    |||||||||| ||||||| ||  | |||||  |||||||||||||| || |||||| || |||||| ||| |||||||||||||||||||||||| ||||    
T  39205742 acttcatctttatcaaaagaatcaagcaatttataaatcgacaaaagcagtagaaaaccaagaaccgccatagaattttcagtattttctttcatcttag 39205841  T
Q  156 ctttcaactcacgcgctagcttcaatgctt 185  Q
    ||||||| |||   ||||||||||||||||    
T  39205842 ctttcaagtcaaatgctagcttcaatgctt 39205871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 31 - 186
Target Start/End: Original strand, 39196485 - 39196640
Alignment:
Q  31 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 130  Q
    ||||||| || |||||||||  |  |||||||||||||||||| ||  | |||||  |||||| ||||||| ||  ||||| || |||||| ||||||||    
T  39196485 agcaacaaatgcaaaaagctccaaaacttcatcttcatcaaaagaatcaagcaatttataaattgacaaaagcagcagaaagccaagaaccgccaaagaa 39196584  T
Q  131 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttc 186  Q
    ||||||||||| || ||||||||||||||||| |||   |||||||||||||||||    
T  39196585 ttttcagtattgtcattcatgttagctttcaaatcaaatgctagcttcaatgcttc 39196640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 31 - 186
Target Start/End: Original strand, 39413004 - 39413159
Alignment:
Q  31 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 130  Q
    ||||||| || |||||||||  | || |||||||||||| ||| |||||  ||||||| |||  ||||||| ||| ||||| |  |||||| |||||||     
T  39413004 agcaacaaatgcaaaaagctccaagatttcatcttcatccaaaaaagtaaccaatccacaaactgacaaaagcaacagaaaactaagaaccgccaaagag 39413103  T
Q  131 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttc 186  Q
    ||||| ||||||||||||| |||||||||||| ||| | |||||||||||||||||    
T  39413104 ttttcggtattttctttcaagttagctttcaaatcaagtgctagcttcaatgcttc 39413159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 58 - 192
Target Start/End: Original strand, 39380496 - 39380630
Alignment:
Q  58 ttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttagct 157  Q
    |||||||||||| ||| ||||| ||||||||||||| ||||||| || ||||||||| |||||| ||| ||||| ||||||||| ||| | |||| ||||    
T  39380496 ttcatcttcatcgaaagaagtaagcaatccataaattgacaaaagcagtagaaatccaagaaccgccacagaatcttcagtattctctcttatgtaagct 39380595  T
Q  158 ttcaactcacgcgctagcttcaatgcttcatctct 192  Q
    ||||| ||| | |||||| ||| |||||| |||||    
T  39380596 ttcaaatcaagtgctagcgtcagtgcttcttctct 39380630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 63 - 185
Target Start/End: Original strand, 44895114 - 44895236
Alignment:
Q  63 cttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttagctttcaa 162  Q
    ||||||| ||| |||||  |||||||||||| ||||||| || |||||| || |||||| |||||||||||||||||||| |||| ||||||||||| ||    
T  44895114 cttcatcgaaagaagtaatcaatccataaattgacaaaagcagtagaaaaccaagaaccaccaaagaattttcagtatttccttttatgttagctttgaa 44895213  T
Q  163 ctcacgcgctagcttcaatgctt 185  Q
     | | | ||||||||||||||||    
T  44895214 tttatgtgctagcttcaatgctt 44895236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 56 - 182
Target Start/End: Original strand, 39478294 - 39478420
Alignment:
Q  56 acttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttag 155  Q
    |||||| |||| || ||| ||||| ||||||||||||| ||||||| || ||||||  | |||||  || |||||||||||||||||||| | |||| ||    
T  39478294 acttcaccttcttcgaaagaagtaagcaatccataaattgacaaaagcagtagaaaatcaagaactgccgaagaattttcagtattttctctgatgtaag 39478393  T
Q  156 ctttcaactcacgcgctagcttcaatg 182  Q
    ||||||| ||| | |||||||||||||    
T  39478394 ctttcaaatcatgtgctagcttcaatg 39478420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 31 - 186
Target Start/End: Original strand, 39421161 - 39421313
Alignment:
Q  31 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 130  Q
    ||||||| || |||||||||  |  |||||||||||||  |||||||||  ||||   ||||| ||||||| || |||||| |||||||||   |||  |    
T  39421161 agcaacaaatgcaaaaagctccaacacttcatcttcattgaaataagtaaccaattggtaaattgacaaaagcagtagaaaaccgagaacc---aaatta 39421257  T
Q  131 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttc 186  Q
    |||||||||||||||| ||| ||||||||||| ||| | || ||||||||||||||    
T  39421258 ttttcagtattttcttccatattagctttcaaatcaagagcgagcttcaatgcttc 39421313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 185
Target Start/End: Complemental strand, 39223893 - 39223764
Alignment:
Q  56 acttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttag 155  Q
    |||||||||||||||||  ||  | |||||  |||||| ||||||| ||  ||||| || |||||| ||||||| ||||||||||| |||||||||||      
T  39223893 acttcatcttcatcaaatgaatcaagcaatttataaattgacaaaagcagcagaaaaccaagaaccgccaaagatttttcagtattgtctttcatgtttt 39223794  T
Q  156 ctttcaactcacgcgctagcttcaatgctt 185  Q
    |||| || |||   ||||||||||||||||    
T  39223793 cttttaaatcatatgctagcttcaatgctt 39223764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 192
Target Start/End: Original strand, 39188738 - 39188890
Alignment:
Q  40 tccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagta 139  Q
    ||||||||||||||  || ||||||||||  ||| ||| |  ||| |||||||| || | ||  | |||||| || |||||| ||||||||||| || ||    
T  39188738 tccaaaaagctttaaaacatcatcttcattgaaagaaggaaccaaaccataaattgatagaaggagtagaaaaccaagaaccaccaaagaatttccatta 39188837  T
Q  140 ttttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctct 192  Q
    |||||||||||||||||||| || ||| | ||||| |||| ||| || |||||    
T  39188838 ttttctttcatgttagcttttaaatcaagtgctagtttcattgcatcctctct 39188890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 192
Target Start/End: Complemental strand, 39604510 - 39604362
Alignment:
Q  44 aaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtatttt 143  Q
    ||||||||||  |||||||||||||| ||| ||| |  |||||||||||| |||| ||  | |||||| || |||||  |||   ||||||| |||||||    
T  39604510 aaaagctttaaaacttcatcttcatcgaaagaaggagccaatccataaattgacacaaggagtagaaaacccagaactgccaccaaattttcggtatttt 39604411  T
Q  144 ctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctct 192  Q
    |  | ||||||| |||||| | | | |||||||||| |||||| |||||    
T  39604410 cacttatgttagatttcaaattaagtgctagcttcattgcttcttctct 39604362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 55 - 192
Target Start/End: Complemental strand, 44730298 - 44730161
Alignment:
Q  55 gacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgtta 154  Q
    |||||||||| ||||||| |||||| |||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  44730298 gacttcatctccatcaaagtaagtaagcaatctataaatcgtcaaaatcaatagaaatccgagaacctcctaagaattttcagtattttcttttatgtta 44730199  T
Q  155 gctttcaactcacgcgctagcttcaatgcttcatctct 192  Q
    |||||||||||| | ||||||||||| |||||||||||    
T  44730198 gctttcaactcatgtgctagcttcaaagcttcatctct 44730161  T

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Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 30 - 192
Target Start/End: Original strand, 44949869 - 44950031
Alignment:
Q  30 cagcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaaga 129  Q
    ||||||||||| || |||||||   ||| ||||||  |||||| |||||| |||||||||||||||  | |||||||||||||| |||||||||||||||    
T  44949869 cagcaacagatgcataaagcttagagacatcatctcgatcaaagtaagtaagcaatccataaatcgttataatcaatagaaatctgagaacctccaaaga 44949968  T
Q  130 attttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctct 192  Q
    ||||| |||||||||||| || |||  |||||||||| | ||||||||||| |||||||||||    
T  44949969 atttttagtattttcttttattttaaatttcaactcatgtgctagcttcaaagcttcatctct 44950031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 33 - 192
Target Start/End: Complemental strand, 45343170 - 45343011
Alignment:
Q  33 caacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaatt 132  Q
    |||||||| |||||||||  | ||||||||||| ||||||| ||||| ||||| ||| ||| |||||||||| |||||| || ||||| | ||| || ||    
T  45343170 caacagatacaaaaagctccaagacttcatctttatcaaaagaagtaagcaatacatgaattgacaaaatcagtagaaaaccaagaacgttcaatgattt 45343071  T
Q  133 ttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctct 192  Q
    |||||||||| |||||| |||||||||||||||| | |||||||| |||||||| |||||    
T  45343070 ttcagtatttcctttcacgttagctttcaactcaagtgctagcttgaatgcttcttctct 45343011  T

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Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 30 - 186
Target Start/End: Complemental strand, 17060854 - 17060698
Alignment:
Q  30 cagcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaaga 129  Q
    ||||||||||| ||||||| |  | ||||||||||| |||||||||||||  ||||||||||| |||||| ||||| |||||||||||||||||||| ||    
T  17060854 cagcaacagatgcaaaaagatccaagacttcatcttgatcaaaataagtaaacaatccataaaccgacaagatcaacagaaatccgagaacctccaatga 17060755  T
Q  130 attttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttc 186  Q
    || |||||||||| |||| |||||||||||||||||| | ||||||||||| |||||    
T  17060754 atattcagtatttgcttttatgttagctttcaactcatgtgctagcttcaaagcttc 17060698  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 31 - 186
Target Start/End: Complemental strand, 33562496 - 33562341
Alignment:
Q  31 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 130  Q
    ||||||| || |||||||||  |  |||||||||||||||||| ||  | |||||  |||||| ||||||| ||  ||||| || |||||| ||||| ||    
T  33562496 agcaacaaatgcaaaaagctccaaaacttcatcttcatcaaaagaatcaagcaatttataaattgacaaaagcatcagaaaaccaagaaccgccaaaaaa 33562397  T
Q  131 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttc 186  Q
      |||||||||||||||||||||||||||||| |||   |||||||||||||||||    
T  33562396 aattcagtattttctttcatgttagctttcaaatcaaatgctagcttcaatgcttc 33562341  T

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Target: scaffold0283 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 30 - 192
Target Start/End: Original strand, 5849 - 6011
Alignment:
Q  30 cagcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaaga 129  Q
    ||||||||||| || |||||||   ||| ||||||  |||||| |||||| |||||||||||||||  | |||||||||||||| |||||||||||||||    
T  5849 cagcaacagatgcataaagcttagagacatcatctcgatcaaagtaagtaagcaatccataaatcgttataatcaatagaaatctgagaacctccaaaga 5948  T
Q  130 attttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctct 192  Q
    ||||| |||||||||||| || |||  |||||||||| | ||||||||||| |||||||||||    
T  5949 atttttagtattttcttttattttaaatttcaactcatgtgctagcttcaaagcttcatctct 6011  T

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Target: chr7 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 55 - 192
Target Start/End: Complemental strand, 19809083 - 19808949
Alignment:
Q  55 gacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgtta 154  Q
    ||||||||||||||||||||||||| ||||| ||||||  ||||||| || |||||| || |||||| ||| ||||||||||||| |   ||||||||||    
T  19809083 gacttcatcttcatcaaaataagtaagcaattcataaactgacaaaagcagtagaaaaccaagaaccaccagagaattttcagtact---tttcatgtta 19808987  T
Q  155 gctttcaactcacgcgctagcttcaatgcttcatctct 192  Q
    |||||||| ||| | ||||||||||||| ||| |||||    
T  19808986 gctttcaaatcaagtgctagcttcaatgtttcttctct 19808949  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 16114477 - 16114420
Alignment:
Q  128 gaattttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgctt 185  Q
    ||||||| |||||| ||| |||||| ||||||||| || |||||||||||||||||||    
T  16114477 gaatttttagtattctctctcatgtaagctttcaaatcgcgcgctagcttcaatgctt 16114420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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